JSON

Genome sc|0000530

Name

Methanocrinis alkalitolerans

Database

NCBI Assembly

Accession

GCA_029167205.1

Genomics

Accession
NCBI Assembly:GCA_029167205.1
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 99.84%
  • Contamination: 0.0%
  • Quality: 99.84
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
240.0 ×
Source
Other features
  • G+C Content: 58.0%
  • Coding Density: 86.11%
  • Codon Table: 11
  • N50: 58,935 bp
  • Contigs: 96
  • Largest Contig: 128,298 bp
  • Assembly Length: 2,444,195 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were evaluated using CheckM (Parks et al., 2015).
Annotation was made using PGAP (Tatusova et al., 2016).
tRNA elements were detected by tRNAscan-SE (Lowe and Eddy, 1997).
Automated checks
Complete
Last modified 12 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-06
Location
Not detected
Toponym
Geo Loc Name: Russia: Taman Peninsula
Environment
Sample Type: mud of terrestrial mud volcano
Isolation Source: terrestrial mud volcano
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 12 days ago

Sequencing Experiments

16S rRNA based profiling of enrichment culture M04Ac


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