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Methanocrinis harundinaceusTs

Citation

Formal styling
Methanocrinis harundinaceusTs Khomyakova et al., 2023 (priority 2024)
Effective publication
Khomyakova et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:gyelqp06 (validated)
Canonical URL
https://seqco.de/i:33292

Nomenclature

Rank
Species
Syllabication
ha.run.di.na'ce.us
Etymology
L. masc. adj. harundinaceus, like a reed, referring to the cell shape of a reed stem
Nomenclatural type
NCBI Assembly: GCF_000235565.1
Reference strain
Strain sc|0038678: 6Ac Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Renaming Methanosaeta harundinacea (Ma et al., 2006) according to Khomyakova et al., 2023.
Classification
Archaea » Halobacteriota » Methanosarcinia » Methanotrichales » Methanotrichaceae » Methanocrinis » Methanocrinis harundinaceusTs
Parent
Methanocrinis gtdb assigned in Khomyakova et al., 2023
Alternative placements
Synonyms

Genomics

Accession
NCBI Assembly:GCF_000235565.1
Cultures
Strain sc|0038678
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.79%
  • Contamination: 2.26%
  • Quality: 88.49
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
494.0 ×
Source
Other features
  • G+C Content: 60.6%
  • Coding Density: 86.97%
  • Codon Table: 11
  • N50: 2,559,043 bp
  • Contigs: 2
  • Largest Contig: 2,559,043 bp
  • Assembly Length: 2,571,034 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 11 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 2 years ago by Merkel, Alexander
Submitted
Almost 2 years ago by Merkel, Alexander
Curators
Validated
Almost 2 years ago by Rodriguez-R, Luis M
Date of priority
2024-01-07 10:19 AM (UTC)

Publications
3

Citation Title
Khomyakova et al., 2023, Frontiers in Microbiology Phenotypic and genomic characterization of the first alkaliphilic aceticlastic methanogens and proposal of a novel genus Methanocrinis gen.nov. within the family Methanotrichaceae
Effective publication
Assigned this taxon
Akinyemi et al., 2020, Bergey's Manual of Systematics of Archaea and Bacteria Methanothrix
Ma, 2006, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY Methanosaeta harundinacea sp. nov., a novel acetate-scavenging methanogen isolated from a UASB reactor


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seqco.de/r:gyelqp06