Keywords: GSC:MIxS;MIGS:5.0

strain

DSM 16643

collection_date

not collected

isol_growth_condt

missing

ref_biomaterial

missing

type-material

type strain of Methanobrevibacter millerae

INSDC secondary accession

SRS1644792

organism

Methanobrevibacter millerae

project_name

Methanobrevibacter millerae DSM 16643

NCBI submission package

MIGS.ba.5.0

feature

missing

material

missing

biome

missing

num_replicons

missing

geo_loc_name

Australia:Perth, Australia

investigation_type

bacteria_archaea

env_package

missing

lat_lon

not collected

BioSampleModel

MIGS.ba

ENA-FIRST-PUBLIC

2014-07-11

ENA-LAST-UPDATE

2019-06-20

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX2052688" alias="JGI-SRA-49402" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX2052688</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-49402</EXTERNAL_ID>
  </IDENTIFIERS>
  <TITLE>Methanobrevibacter millerae DSM 16643</TITLE>
  <STUDY_REF accession="SRP082886">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP082886</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA254858</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1644792">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1644792</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02910315</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>USUT</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Regular (DNA)</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1644792</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA455047</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2052688&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2052688&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>