SeqCode Registry
cognitis nomina
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Genomes
sc|0000617
JSON
Genome sc|0000617
Name
Methanocatella woesei
Database
NCBI Assembly
Accession
GCF_003111605.1
Genomics
Accession
NCBI Assembly:
GCF_003111605.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
0.0%
Quality:
100.0
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN06461353
Other features
G+C Content:
29.9%
Coding Density:
90.11%
Codon Table:
11
N50:
240,239 bp
Contigs:
12
Largest Contig:
716,192 bp
Assembly Length:
1,543,150 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Methanobrevibacter woesei
Automated checks
Complete
Last modified
about 1 month ago
Sample Metadata
BioSample entries
BioSample: SAMN06461353
Date
Collection Date:
not collected
Location
Not detected
Toponym
Geo Loc Name:
USA
Environment
Sample Type:
whole organism
Isolation Source:
goose feces
Other
Not detected
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN06461353
: Microbe sample from Methanobrevibacter woesei
Metadata retrieved
about 1 month ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN06461353
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN06461353
strain
DSM 11979
collection_date
not collected
type-material
type strain of Methanobrevibacter woesei
NCBI submission package
Microbe.1.0
organism
Methanobrevibacter woesei
geo_loc_name
USA
culture_collection
DSM:11979
sample_type
whole organism
isolation_source
goose feces
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2017-03-01
ENA-LAST-UPDATE
2019-06-20
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