strain

SH

type-material

type strain of Methanobrevibacter wolinii

INSDC secondary accession

SRS1434996

Gram Staining

Gram+

organism

Methanobrevibacter wolinii SH

common name

JHWX

project_name

Methanobrevibacter wolinii SH

GOLD Stamp ID

Gi0054485

NCBI submission package

Generic.1.0

assembly

vpAllpaths v. r46652

investigation_type

bacteria_archaea

sequencing_meth

WGS

Gene Calling Method

Prodigal 2.5

BioSampleModel

Generic

ENA-FIRST-PUBLIC

2014-05-05

ENA-LAST-UPDATE

2019-06-20

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX1758862" alias="JGI-SRA-10815" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX1758862</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-10815</EXTERNAL_ID>
  </IDENTIFIERS>
  <TITLE>Methanobrevibacter wolinii SH</TITLE>
  <STUDY_REF accession="SRP074947">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP074947</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA223477</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS1434996">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS1434996</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN02744021</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>PCBZ</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Regular (DNA)</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS1434996</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA425136</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1758862&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX1758862&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>