Methanarmilla wolinii^Ts

Citation

Formal styling

Methanarmilla wolinii^Ts Protasov et al., 2023 (priority 2024)

Effective publication

Protasov et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:hfttq0ec (validated)

Canonical URL

https://seqco.de/i:32440

Nomenclature

Rank

Species

Syllabication

wo.lin'i.i.

Etymology

N.L. gen. masc. n. wolinii, of Wolin, named in honor of Meyer J. Wolin for his singular contributions to the physiological understanding of the role of methanogens and interspecies hydrogen transfer in anaerobic habitats

Nomenclatural type

NCBI Assembly: GCF_000621965.1

Reference strain

Strain sc|0038593: SH = ATCC BAA-1170 = DSM 11976 Lookup StrainInfo

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Coccobacillus with slightly tapered or rounded ends, about 0.6 µm in width and 1.0–1.4 µm in length, occurring in pairs or short chains. Gram-positive. Cell walls are composed of pseudomurein. Cells are resistant to lysis by SDS. Optimum temperature 37 °C. Optimum pH 7 (as in Miller, Lin, 2002). The G+C content of the type genome is 24.2 mol%, and the genome size is 2.04 Mbp. 

Classification

Archaea » Methanobacteriota » Methanobacteria » Methanobacteriales » Methanobacteriaceae » Methanarmilla » Methanarmilla wolinii^Ts

Parent

Methanarmilla gtdb

Alternative placements

• Methanobrevibacter assigned in Miller, Lin, 2002

Genomics

Accession

NCBI Assembly:GCF_000621965.1

Cultures

Strain sc|0038593

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.0%
• Quality: 100.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN02744021

Other features

• G+C Content: 24.21%
• Coding Density: 76.0%
• Codon Table: 11
• N50: 137,557 bp
• Contigs: 26
• Largest Contig: 328,521 bp
• Assembly Length: 2,041,814 bp
• Ambiguous Assembly Fraction: 0.15%

Submitter comments

Methanobrevibacter wolinii

Automated checks

Complete

See additional details

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Last modified 11 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCF_000621965.1
• GTDB Tree: s__Methanarmilla wolinii
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Methanarmilla wolinii
• Wikidata: Q130444021

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered

Over 2 years ago by Protasov, Evgenii

Submitted

Over 1 year ago by Protasov, Evgenii

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated

Over 1 year ago by Rodriguez-R, Luis M

Date of priority

2024-04-16 06:48 PM (UTC)