Keywords: GSC:MIxS;MIMAG:5.0

collection_date

2016-01-31

dreived-from

This BioSample is a metagenomic assembly obtained from the termite gut metagenome BioSample: SAMN13139697

INSDC secondary accession

SRS5277227

organism

Candidatus Bathyarchaeota archaeon

env_broad_scale

woodland biome

metagenomic

1

environmental-sample

1

env_local_scale

tropical woodland biome

metagenome-source

termite gut metagenome

isolate

Lab288P3bin169

NCBI submission package

MIMAG.host-associated.5.0

host_diet

Soil feeder

host

Labiotermes labralis

geo_loc_name

French Guiana: Petit-Saut

host_body_habitat

gut

env_medium

digestive tract

lat_lon

5.3454 N 53.2462 W

isolation_source

P3 gut compartment

sample-type

metagenomic assembly

BioSampleModel

MIMAG.host-associated

ENA-FIRST-PUBLIC

2019-10-22

ENA-LAST-UPDATE

2019-12-02

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX6725251" alias="Lab288P3_bin169" center_name="SUB6185198" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX6725251</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6185198">Lab288P3_bin169</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Binning of metagenomic reads from  the P3 gut compartment of Labiotermes labralis</TITLE>
  <STUDY_REF accession="SRP218535">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP218535</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA560329</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Genome reconstructed from a termite gut metagenome suing MetaBAT2.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5277227">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5277227</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN12581916</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Lab288P3_bin169</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5277227</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA942061</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6725251&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX6725251&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>