JSON

Genome sc|0000773

Name

Methanoplasma cognatum

Database

NCBI Assembly

Accession

GCA_009777615.1

Genomics

Accession
NCBI Assembly:GCA_009777615.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.98%
  • Contamination: 2.42%
  • Quality: 85.88
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
38.0 ×
Source
Other features
  • G+C Content: 52.26%
  • Coding Density: 90.19%
  • Codon Table: 11
  • N50: 267,672 bp
  • Contigs: 7
  • Largest Contig: 648,276 bp
  • Assembly Length: 1,619,733 bp
  • Ambiguous Assembly Fraction: 0.0062%
Submitter comments
CheckM and TRNAscan-SE 2.0 were used to assess genome quality and number of tRNAs. 
Automated checks
Complete


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license