Pegaeibacterium caenilacustreTs


Citation

Formal styling
Pegaeibacterium caenilacustreTs Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23681

Nomenclature

Rank
Species
Syllabication
cae.ni.la.cus'tre
Etymology
L. neut. n. caenum, mud; N.L. neut. adj. lacustre, of or from a lake; N.L. neut. adj. caenilacustre, from mud from a lake
Nomenclatural type
NCBI Assembly: GCA_903820505.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the nomenclatural type for the genus Pegaeibacterium. Estimated genome sizes for the species range between 2.1 and 2.2 Mb with GC% of 54.27-54.30 %. Some components of the respiratory chain, particularly complex I and V, are encoded by genomes of this species. Cytoplasmic Group A3 [FeFe] and Group 4f [NiFe] hydrogenases are encoded by genomes of this species. As incomplete respiratory pathways are present in this species and no terminal electron acceptors are predicted from the genomes, the presence of a reversible acetyl-CoA synthetase coupled with the Group A3 [FeFe] hydrogenase may be indicative that this species is acetogenic, with respiratory complex I providing oxidized NAD+ and maintaining a proton gradient across the membrane, and complex V (respiratory F-type ATPase) producing ATP. Both assemblies for the species originate from freshwater sediment from Lake Alinen Mustajärvi, Finland. The nomenclatural type for the species is the genome GCA_903820505.1.
Classification
Bacteria » Omnitrophota » Omnitrophia » Omnitrophales » Aquincolibacteriaceae » Pegaeibacterium » Pegaeibacterium caenilacustreTs
Parent
Pegaeibacterium gtdb

Genomics

Accession
NCBI Assembly:GCA_903820505.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.99%
  • Contamination: 0.85%
  • Quality: 92.74
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 54.27%
  • Coding Density: 91.89%
  • Codon Table: 11
  • N50: 72,311 bp
  • Contigs: 68
  • Largest Contig: 197,154 bp
  • Assembly Length: 2,228,086 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimated with CheckM v.2.
Automated checks
Complete
See additional details

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 14 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



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