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Palauibacter scopulicola

Citation

Formal styling
Palauibacter scopulicola Aldeguer-Riquelme et al., 2023
Effective publication
Aldeguer-Riquelme et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:0hkazsoc (validated)
Canonical URL
https://seqco.de/i:23803 Copy

Nomenclature

Rank
Species
Syllabication
s.co.pu.li'co.la
Etymology
L. masc. n. scopulus, reef, rock under the sea; L. masc. or fem. n. suff. -cola, inhabitant; N.L. masc. n. scopulicola, inhabitant of reefs, rocks under the sea
Nomenclatural type
NCBI Assembly: GCA_947581915.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Classification
Bacteria » Gemmatimonadota » Gemmatimonadetes » Palauibacterales » Palauibacteraceae » Palauibacter » Palauibacter scopulicola
Parent
Palauibacter gtdb

Genomics

Accession
NCBI Assembly:GCA_947581915.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6%
  • Contamination: 3.3%
  • Quality: 79.1
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 69.29%
  • Coding Density: 93.24%
  • Codon Table: 11
  • N50: 101,838 bp
  • Contigs: 79
  • Largest Contig: 254,251 bp
  • Assembly Length: 3,616,708 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete
See additional details
Last modified 6 months ago

Metadata

Outside links and data sources
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Local history
Registered by
Aldeguer-Riquelme, Borja, created over 2 years ago
Submitted by
Aldeguer-Riquelme, Borja about 2 years ago
Curators
Endorsed by
Chuvochina, Maria about 2 years ago
Validated by
Chuvochina, Maria almost 2 years ago
Date of priority
2023-06-23 07:38 AM (UTC)

Publications
1

Citation Title
Aldeguer-Riquelme et al., 2023, mSystems Distribution, abundance, and ecogenomics of the Palauibacterales , a new cosmopolitan thiamine-producing order within the Gemmatimonadota phylum
Effective publication


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