JSONPDF

Pantoea multigeneris

Citation

Formal styling
Pantoea multigeneris Crosby et al., 2023
Effective publication
Crosby et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xfaladud (validated)
Canonical URL
https://seqco.de/i:31368

Nomenclature

Rank
Species
Syllabication
mul.ti.ge.ne'ris
Etymology
L. fem. adj. multigeneris, multifarious, of different kinds or varied, referring to the varied sources of isolation of this organism
Nomenclatural type
NCBI Assembly: GCF_011752615.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species consists of the genomes of two strains, A4 and Acro-835, which have a pairwise ANI of approximately 96%, likely indicating higher genomic diversity within this species. Strain A4 was isolated from a decaying flower bud in Malaysia while strain Acro-835 was isolated from an ant (Acromyrmex) fungus garden in Brazil. This species splits off at a basal node within the Pantoea phylogeny, with lower than 80% ANI to the genomes of the closest known relatives. The nomenclatural type for the species is the genome of Acro-835Ts, available under the GenBank assembly accession number GCF_011752615.1.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea multigeneris
Parent
Pantoea gtdb

Genomics

Accession
NCBI Assembly:GCF_011752615.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.7%
  • Contamination: 2.37%
  • Quality: 86.85
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
75.0 ×
Source
Other features
  • G+C Content: 52.83%
  • Coding Density: 87.86%
  • Codon Table: 11
  • N50: 418,101 bp
  • Contigs: 48
  • Largest Contig: 1,241,989 bp
  • Assembly Length: 5,419,927 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
See additional details
Last modified about 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago by Palmer, Marike
Submitted
Over 2 years ago by Palmer, Marike
Curators
Endorsed
Over 2 years ago by Chuvochina, Maria
Validated
Almost 2 years ago by Rodriguez-R, Luis M
Date of priority
2023-11-15 01:31 PM (UTC)

Publications
1

Citation Title
Crosby et al., 2023, Frontiers in Microbiology Genomic delineation and description of species and within-species lineages in the genus Pantoea
Effective publication


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:xfaladud