Pantoea floridensis

Citation

Formal styling

Pantoea floridensis Crosby et al., 2023

Effective publication

Crosby et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:xfaladud (validated)

Canonical URL

https://seqco.de/i:31365

Nomenclature

Rank

Species

Syllabication

flo.ri.den'sis

Etymology

N.L. fem. adj. floridensis, of or from Florida, referring to where this organism was isolated from

Nomenclatural type

NCBI Assembly: GCA_900215435.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species consists of the genome of a single strain, JKS000234. Its source of isolation is a fungus-farming ant garden in Wekiwa Springs State Park, Apopka, Florida. This species shares an most recent common ancestor with P. variicola sp. nov. The ANI between the genomes of the two species is below 90%.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea floridensis

Parent

Pantoea ncbigtdb

Genomics

Accession

NCBI Assembly:GCA_900215435.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 0.19%
• Quality: 99.05

Ribosomal and transfer RNA genes

• 7 16S rRNAs (up to 100.0%)
• 7 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

70.0 ×

Source

• SRA: SRX3006580

Other features

• G+C Content: 53.52%
• Coding Density: 87.72%
• Codon Table: 11
• N50: 4,409,457 bp
• Contigs: 5
• Largest Contig: 4,409,457 bp
• Assembly Length: 5,453,142 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• NCBI Taxonomy: 1938870
• GTDB Genome: GCA_900215435.1
• GTDB Tree: s__Pantoea floridensis
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Pantoea floridensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified 11 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike over 1 year ago

Submitted by

Palmer, Marike over 1 year ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Rodriguez-R, Luis M about 1 year ago

Date of priority

2023-11-15 01:31 PM (UTC)