Nucleicultrix amoebiphila^Ts

Citation

Formal styling

Nucleicultrix amoebiphila^Ts Schulz et al., 2014 (valid 2023)

Effective publication

Schulz et al., 2014

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:q5gjvsma (validated)

Cannonical URL

https://seqco.de/i:31953

Nomenclature

Rank

Species

Syllabication

a.moe.bi'phi.la

Etymology

N.L. fem. n. amoeba, an amoeba; N.L. fem. adj. suff. -phila, friend, loving; N.L. fem. adj. amoebiphila, amoeba-loving

Nomenclatural type

NCBI Assembly: GCA_002117145.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The description is the same as given by (Schulz et al., 2014). Briefly, the organism is a intranuclear symbiont of amoebae (Hartmannella sp.) with coccoid-shaped cells with a length of 0.5–1 μm, a diameter of 0.3–0.4 μm and a Gram-negative-type cell wall.  

Notes

Intranuclear symbiont of Hartmannella sp. host

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » “Caedimonadales” » Nucleicultricaceae » Nucleicultrix » Nucleicultrix amoebiphila^Ts

Parent

Nucleicultrix gtdb

Genomics

Accession

NCBI Assembly:GCA_002117145.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.55%
• Contamination: 0.2%
• Quality: 95.55

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

1700.0 ×

Source

• BioSample: SAMN02840763

Other features

• G+C Content: 39.72%
• Coding Density: 90.38%
• Codon Table: 11
• N50: 1,838,212 bp
• Contigs: 1
• Largest Contig: 1,838,212 bp
• Assembly Length: 1,838,212 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

checkM2

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_002117145.1
• GTDB Tree: s__Nucleicultrix amoebiphila
• Global Biodiversity Information Facility (GBIF)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 12 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria about 1 year ago

Submitted by

Chuvochina, Maria about 1 year ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike 12 months ago

Validated by

Rodriguez-R, Luis M 12 months ago

Date of priority

2023-07-11 09:32 AM (UTC)