JSONPDF

Mesorhizobium humile

Citation

Formal styling
Mesorhizobium humile van Lill et al., 2024
Effective publication
van Lill et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:3oauw4q0 (validated)
Canonical URL
https://seqco.de/i:32827

Nomenclature

Rank
Species
Syllabication
hu.mi'le
Etymology
L. neut. adj. humile, humble, referring to the type strain's small colony size on YM agar and limited carbon source utilisation.
Nomenclatural type
NCBI Assembly: GCA_033977215.1
Reference strain
VK2B
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are Gram-negative, motile rods. On YM agar, following 5 days of incubation at 28 °C, the colonies are small, circular, white, opaque with entire margins and flat elevations with dry consistency. The strain was able to grow in the pH range of 6 to 9 and tolerate NaCl concentration of 0.3 % to 1.5 %. The strain was able to grow at 4 °C to 35 °C. The strain tested positive for urease and esculin hydrolysis. The strain could assimilate 4-nitrophenyl-β,D-galactopyranoside, D-glucose, L-arabinose, D-mannose, D-mannitol, N-acetyl-glucosamine, D-maltose, potassium gluconate, adipic acid and malic acid. The strain could only utilize glucuronamide, α-keto-glutaric acid and D-malic acid as the sole sources of carbon. The strain was able to form effective symbiosis with V. karroo.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Phyllobacteriaceae » Mesorhizobium » Mesorhizobium humile
Parent
Mesorhizobium ncbi

Genomics

Accession
NCBI Assembly:GCA_033977215.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
230.8 ×
Source
Other features
  • G+C Content: 63.56%
  • Coding Density: 86.53%
  • Codon Table: 11
  • N50: 234,275 bp
  • Contigs: 78
  • Largest Contig: 613,800 bp
  • Assembly Length: 6,750,448 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 10 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Van Lill, Melandre about 1 year ago
Submitted by
Van Lill, Melandre 11 months ago
Curators
Endorsed by
Rodriguez-R, Luis M 8 months ago
Validated by
Rodriguez-R, Luis M 7 months ago
Date of priority
2024-04-27 05:48 AM (UTC)

Publications
1

Citation Title
van Lill et al., 2024, Systematic and Applied Microbiology SeqCode facilitates naming of South African rhizobia left in limbo
Effective publication


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license