Ciceribacter ferrooxidans


Citation

Formal styling
Ciceribacter ferrooxidans Deng et al., 2020 (priority 2025)
Effective publication
Deng et al., 2020
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ktuoeccb (validated)
Canonical URL
https://seqco.de/i:39197

Nomenclature

Rank
Species
Syllabication
fer.ro.o.xi'dans
Etymology
L. neut. n. ferrum, iron; N.L. pref. ferro-, pertaining to ferrous iron; N.L. v. oxido, to oxidise; N.L. masc. part. adj. ferrooxidans, oxidising ferrous iron
Nomenclatural type
NCBI Assembly: GCF_004137355.1
Reference strain
Strain sc|0038875: F8825 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are Gram-negative, facultatively chemolithotrophic, facultatively anaerobic, non-spore-forming, rod-shaped (1.0– 2.0 × 0.6–0.8 μm) with a single flagellum. Growth is good on DSMZ 98 medium but slow on LB. Colonies are circular, convex, entire, glistening, semi-translucent white, and covered with abundant polysaccharides on the surface. Growth occurs in 0–3.5% (w/v) NaCl at pH 6.0–9.0 (optimum at 7.5), and at 20–42°C (optimum at 37°C). Nitrate is reduced to nitrite and nitrogen gas. Utilizes thiosulfate and ferrous iron for electron donor. Carbon sources include bicarbonate, D-maltose, D-trehalose, D-cellobiose, gentiobiose, sucrose, D-turanose, D-raffinose, α-D-lactose, D-melibiose, β-methyl D-glucoside, D-salicin, N-acetyl-D-glucosamine, N-acetyl-D-galactosamine, α-D-glucose, D-mannose, D-fructose, D-galactose, 3-methyl glucose, D-fucose, L-fucose, L-rhamnose, D-sorbitol, D-mannitol, D-arabitol, myo-inositol, glycerol, D-glucose-6-phosphate, D-fructose-6-phosphate, glycyl-L-proline, L-alanine, L-arginine, L-aspartic acid, L-glutamic acid, L-pyroglutamic acid, L-serine, pectin, L-galactonic acid lactone, D-glucuronic acid, mucic acid, p-hydroxy-phenylacetic acid, L-lactic acid, α-keto-glutaric acid, D-malic acid, L-malic acid, bromo-succinic acid, and γ-amino-butryric acid, but not dextrin, N-acetyl-β-D-mannosamine, N-acetyl neuraminic acid, nosine, D-aspartic acid, gelatin, L-histidine, D-galacturonic acid, D-gluconic acid, glucuronamide, quinic acid, D-saccharic acid, D-lactic acid methyl ester, citric acid, acetoacetic acid, and formic acid. Cells are resistant to tetrazolium blue, nalidixic acid, and potassium tellurite, but susceptible to fusidic acid, troleandomycin, rifamycin SV, minocycline, lincomycin, guanidine HCl, niaproof 4, vancomycin, tetrazolium violet, lithium chloride, aztreonam, sodium butyrate, and sodium bromate. The major fatty acids are summed feature 1 (C18:1ω9c or/and C 18:1ω11t or/and C 18:1ω13c), C14:0 3-OH, and C18:0. The polar lipids are phosphatidymonomethylethanolamine, phosphatidylethanolamine, phosphatidylcholine, nitrogen containing phosphoglycolipid, phosphoglycolipid, and unknown phospholipid. The predominant isoprenoid quinone is ubiquinone Q-10. The DNA G + C content of the type strain is 63.1 mol%. The type strain, F8825 (= CCTCC AB 2018196 = KCTC62948), was isolated from the Fe(II)-rich sediment of anurban creek in Pearl River Delta, China.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Ciceribacter » Ciceribacter ferrooxidans
Parent
Ciceribacter ncbi

Genomics

Accession
NCBI Assembly:GCF_004137355.1
Cultures
Strain sc|0038875
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.1%
  • Contamination: 2.8%
  • Quality: 84.1
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
168.0 ×
Source
Other features
  • G+C Content: 63.3%
  • Coding Density: 88.19%
  • Codon Table: 11
  • N50: 438,430 bp
  • Contigs: 427
  • Largest Contig: 905,764 bp
  • Assembly Length: 5,094,448 bp
  • Ambiguous Assembly Fraction: 0.0022%
Automated checks
Complete

Last modified 8 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Validated
8 months ago by Rodriguez-R, Luis M
Date of priority
2025-03-20 05:24 AM (UTC)

Publications
1

Citation Title
Deng et al., 2020, Journal of Microbiology Ciceribacter ferrooxidans sp. nov., a nitrate-reducing Fe(II)-oxidizing bacterium isolated from ferrous ion-rich sediment
Effective publication



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