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Kaistia cartagenensis

Citation

Formal styling
Kaistia cartagenensis Jiménez et al., 2025 (priority 2024)
Effective publication
Jiménez et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:ayug-nu6 (validated)
Canonical URL
https://seqco.de/i:43934

Nomenclature

Rank
Species
Syllabication
car.ta.ge.nen'sis
Etymology
N.L. fem. adj. cartagenensis, pertaining to Cartagena de Indias, the city close to Baru Island, where the mangrove soil samples were collected
Nomenclatural type
NCBI Assembly: GCA_963966455.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A species established on the basis of MiGA taxonomic novelty analyses, ANI, AAI, 16S rRNA gene phylogenetic reconstruction, phylogenomic tree, and the type material is the genome MAG11_P8. The MAG was reconstructed from PET-transforming bacterial consortium and encoded for a putative PET hydrolase. In addition, genes involved in PET-monomers catabolism were found within the MAG.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Kaistiaceae » Kaistia » Kaistia cartagenensis
Parent
Kaistia gtdb

Genomics

Accession
NCBI Assembly:GCA_963966455.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.0%
  • Contamination: 1.0%
  • Quality: 92.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 56.0%)
  • tRNAs for 19 amino acids
Sequencing depth
2804.0 ×
Source
Other features
  • G+C Content: 67.71%
  • Coding Density: 90.35%
  • Codon Table: 11
  • N50: 23,892 bp
  • Contigs: 278
  • Largest Contig: 78,720 bp
  • Assembly Length: 4,551,535 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM v1.2.2 
Automated checks
Complete
See additional details
Last modified about 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago by Jimenez, Diego
Submitted
Over 1 year ago by Jimenez, Diego
Curators
Endorsed
Over 1 year ago by Rodriguez-R, Luis M
Validated
About 1 year ago by Palmer, Marike
Date of priority
2024-09-30 02:00 PM (UTC)

Publications
1

Citation Title
Jiménez et al., 2025, Trends in Biotechnology Engineering the mangrove soil microbiome for selection of polyethylene terephthalate-transforming bacterial consortia
Effective publication


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seqco.de/r:ayug-nu6