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Pampinifervens sericum

Citation

Formal styling
Pampinifervens sericum Palmer et al., 2025
Effective publication
Palmer et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:54y7mje2 (validated)
Canonical URL
https://seqco.de/i:43942

Nomenclature

Rank
Species
Syllabication
se.ri'cum
Etymology
L. neut. adj. sericum, silken, referring to the silk-like appearance of the streamer communities in many of the springs in the Rehai Geothermal Field, where genomes belonging to this species were recovered from
Nomenclatural type
INSDC Nucleotide: JBBKAW000000000
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
In addition, or in contrast, to the characteristics described for the genus, the genomes of this species lack hyaB, required for Group 1d hydrogenases, and only encode a partial SOX complex required for thiosulfate oxidation. Additionally, structural genes for flagellar motility are absent from genomes of this species. Genomic G+C content for this species range between 42.57% and 44.77%. Genealogical concordance and ANI support the novelty of this species, and phylogenomics and AAI places this species in the genus Pampinifervens gen. nov. The type for this species is the genome GMQ_2011_Aq_binTs, sampled from Gumingquan (Drum Beating Spring) in the Rehai Geothermal Field, Tengchong, China, and is available under the GenBank assembly accession GCA_037722135.1. (BioProject: PRJNA1048437, BioSample: SAMN38639742). 
Classification
Bacteria » Aquificota » Aquificia » Aquificales » Aquificaceae » Pampinifervens » Pampinifervens sericum
Parent
Pampinifervens

Genomics

Accession
INSDC Nucleotide:JBBKAW000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.31%
  • Contamination: 0.0%
  • Quality: 98.31
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
621.0 ×
Source
Other features
  • G+C Content: 43.37%
  • Coding Density: 96.14%
  • Codon Table: 11
  • N50: 17,130 bp
  • Contigs: 103
  • Largest Contig: 73,486 bp
  • Assembly Length: 1,314,328 bp
  • Ambiguous Assembly Fraction: 0.2%
Submitter comments
Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0
Automated checks
Complete
See additional details
Last modified 9 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago by Palmer, Marike
Submitted
Over 1 year ago by Palmer, Marike
Curators
Endorsed
Over 1 year ago by Rodriguez-R, Luis M
Validated
3 months ago by St. John, Emily
Date of priority
2025-08-26 03:49 PM (UTC)

Publications
1

Citation Title
Palmer et al., 2025, Systematic and Applied Microbiology Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs
Effective publication


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