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Pampinifervens sinense

Citation

Formal styling
Pampinifervens sinense Palmer et al., 2025
Effective publication
Palmer et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:54y7mje2 (validated)
Canonical URL
https://seqco.de/i:43943

Nomenclature

Rank
Species
Syllabication
si.nen'se
Etymology
N.L. neut. adj. sinense, of China, referring to China where genomes belonging to this species were recovered from
Nomenclatural type
NCBI Assembly: GCA_037927135.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
In addition to the genus description, this species encodes a partial denitrification pathway, with the potential to convert nitrate to nitrite, and nitrite to nitric oxide. Genomic G+C content of the species range from 44.06% to 45.27%. Genealogical concordance and ANI support the novelty of this species, and phylogenomics and AAI places this species in the genus Pampinifervens gen. nov. The nomenclatural type for the species is the genome ZZQ_201901_bin_7Ts, recovered from the acidic, high-temperature hot spring, Zhenzhuquan, in Tengchong County, China, and is available under the GenBank assembly accession number GCA_037927135.1. (BioProject: PRJNA1041563, BioSample: SAMN38287341). 
Classification
Bacteria » Aquificota » Aquificia » Aquificales » Aquificaceae » Pampinifervens » Pampinifervens sinense
Parent
Pampinifervens

Genomics

Accession
NCBI Assembly:GCA_037927135.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.37%
  • Contamination: 0.41%
  • Quality: 96.32
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
250.0 ×
Source
Other features
  • G+C Content: 44.06%
  • Coding Density: 97.07%
  • Codon Table: 11
  • N50: 163,709 bp
  • Contigs: 12
  • Largest Contig: 332,937 bp
  • Assembly Length: 1,546,113 bp
  • Ambiguous Assembly Fraction: 0.013%
Submitter comments
Completeness and contamination estimates were done with CheckM v 1. The number and completeness of rRNA genes were determined with barrnap v. 0.9, and the number of tRNAs were determined with tRNAscan-SE v. 2.0
Automated checks
Complete
See additional details
Last modified 3 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago by Palmer, Marike
Submitted
Over 1 year ago by Palmer, Marike
Curators
Endorsed
Over 1 year ago by Rodriguez-R, Luis M
Validated
3 months ago by St. John, Emily
Date of priority
2025-08-26 03:49 PM (UTC)

Publications
1

Citation Title
Palmer et al., 2025, Systematic and Applied Microbiology Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs
Effective publication


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