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Azonexus defluvii

Citation

Formal styling
Azonexus defluvii Kondrotaite et al., 2025
Effective publication
Kondrotaite et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:yj2wcqod (validated)
Canonical URL
https://seqco.de/i:49012

Nomenclature

Rank
Species
Syllabication
de.flu'vi.i
Etymology
L. masc. gen. n. defluvii, of wastewater
Nomenclatural type
NCBI Assembly: GCA_016709495.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The MAG representative for this species was isolated from activated sludge, wastewater treatment plant located in Esbjerg West, Denmark
Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Rhodocyclales » Azonexaceae » Azonexus » Azonexus defluvii
Parent
Azonexus

Genomics

Accession
NCBI Assembly:GCA_016709495.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.58%
  • Contamination: 2.24%
  • Quality: 85.38
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 4 23S rRNAs (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
10.101773 ×
Source
Other features
  • G+C Content: 55.52%
  • Coding Density: 89.0%
  • Codon Table: 11
  • N50: 120,675 bp
  • Contigs: 54
  • Largest Contig: 422,078 bp
  • Assembly Length: 4,450,621 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The binning in this project followed the mmlong v0.1.2 hybrid-metaflowpipeline after the assembly step. Metagenome contigs were translated into proteins using FragGeneScan v1.31, annotated taxonomically using Kaiju v1.6.0 against the proGenomes database (2017-05-16). DASTool v1.1.1 --search_engine diamond was used to dereplicate and select for the best representative bin. The dereplicated bins in the analysis were checked for completeness and contamination using CheckM --lineage_wf v1.0.11.
Genome taxonomy was determined using GTDB-Tk v1.0.2 and the refseq release 89 (2019-06-19) database, and the dependencies pplacer v1.1, FastANI v1.2, Prodigal v2.6.2, FastTree 2 v1.2, and HMMER v3.1b2. 
Automated checks
Complete
See additional details
Last modified 7 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Nielsen, Per H.
Submitted
7 months ago by Nielsen, Per H.
Curators
Endorsed
6 months ago by Palmer, Marike
Validated
3 months ago by Rodriguez-R, Luis M
Date of priority
2025-08-25 06:55 AM (UTC)

Publications
1

Citation Title
Kondrotaite et al., 2025, mSystems Ecophysiology and niche differentiation of three genera of polyphosphate-accumulating bacteria in a full-scale wastewater treatment plant
Effective publication


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