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Azonexus defluvii

Citation

Formal styling
Azonexus defluvii Kondrotaite et al., 2025
Effective publication
Kondrotaite et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:yj2wcqod (validated)
Canonical URL
https://seqco.de/i:49012

Nomenclature

Rank
Species
Syllabication
de.flu'vi.i
Etymology
L. masc. gen. n. defluvii, of wastewater
Nomenclatural type
Genome sc|0002760 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The MAG representative for this species was isolated from activated sludge, wastewater treatment plant located in Esbjerg West, Denmark
Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Rhodocyclales » Azonexaceae » Azonexus » Azonexus defluvii
Parent
Azonexus

Genomics

Accession
NCBI Assembly: GCA_016709495.1 [NCBI | EMBL]
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.58%
  • Contamination: 2.24%
  • Quality: 85.38
Ribosomal and transfer RNA genes
  • 3 16S rRNAs (up to 100.0%)
  • 4 23S rRNAs (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
10.101773 ×
Source
Other features
  • G+C Content: 55.52%
  • Coding Density: 89.0%
  • Codon Table: 11
  • N50: 120,675 bp
  • Contigs: 54
  • Largest Contig: 422,078 bp
  • Assembly Length: 4,450,621 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
The binning in this project followed the mmlong v0.1.2 hybrid-metaflowpipeline after the assembly step. Metagenome contigs were translated into proteins using FragGeneScan v1.31, annotated taxonomically using Kaiju v1.6.0 against the proGenomes database (2017-05-16). DASTool v1.1.1 --search_engine diamond was used to dereplicate and select for the best representative bin. The dereplicated bins in the analysis were checked for completeness and contamination using CheckM --lineage_wf v1.0.11.
Genome taxonomy was determined using GTDB-Tk v1.0.2 and the refseq release 89 (2019-06-19) database, and the dependencies pplacer v1.1, FastANI v1.2, Prodigal v2.6.2, FastTree 2 v1.2, and HMMER v3.1b2. 
Automated checks
Complete
See additional details
Last modified over 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago by Nielsen, Per Halkjær
Submitted
Over 1 year ago by Nielsen, Per Halkjær
Curators
Endorsed
Over 1 year ago by Palmer, Marike
Validated
About 1 year ago by Rodriguez-R, Luis M
Date of priority
2025-08-25 06:55 AM (UTC)

Publications
1

Citation Title
Kondrotaite et al., 2025, mSystems Ecophysiology and niche differentiation of three genera of polyphosphate-accumulating bacteria in a full-scale wastewater treatment plant
Effective publication


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