JSONPDF

Azoamicus viridis

Citation

Formal styling
Azoamicus viridis Speth et al., 2024
Effective publication
Speth et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:rlsqwca1 (validated)
Canonical URL
https://seqco.de/i:49076

Nomenclature

Rank
Species
Syllabication
vi.ri'dis
Etymology
L. gen. n. viridis, pertaining to green, in reference to Greene county, where the sample containing the species was taken
Nomenclatural type
NCBI Assembly: GCA_043390165.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
’Candidatus Azoamicus soli’ (L. masc. n. soli, of the earth). A bacterial species identified by metagenomic analyses. This species includes all bacteria with genomes that show ≥95% average nucleotide identity to the type genome for the species to which is available via NCBI BioSample SAMN39831885 and NCBI GenBank accession GCA_043390165.1
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Azoamicales » Azoamicaceae » Azoamicus » Azoamicus viridis
Parent
Azoamicus assigned in Speth et al., 2024

Genomics

Accession
NCBI Assembly:GCA_043390165.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
30.0 ×
Source
Other features
  • G+C Content: 26.0%
  • Coding Density: 92.78%
  • Codon Table: 11
  • N50: 373,572 bp
  • Contigs: 1
  • Largest Contig: 373,572 bp
  • Assembly Length: 373,572 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Circular endosymbiont genome. Completeness and contamination based on the circularity, not marker gene content
Automated checks
Complete
See additional details
Last modified about 2 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Speth, Daan, created 3 months ago
Submitted by
Speth, Daan 2 months ago
Curators
Validated by
Palmer, Marike 10 days ago
Date of priority
2024-11-11 08:18 AM (UTC)

Publications
1

Citation Title
Speth et al., 2024, Nature Communications Genetic potential for aerobic respiration and denitrification in globally distributed respiratory endosymbionts
Effective publication
Assigned this taxon


© 2022-2025 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license