Hahnella aquaticaTs


Citation

Formal styling
Hahnella aquaticaTs Salcher et al., 2025
Effective publication
Salcher et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:o5wsiwof (validated)
Canonical URL
https://seqco.de/i:49114

Nomenclature

Rank
Species
Syllabication
a.qua.ti'ca
Etymology
L. fem. adj. aquatica, living or found in the water.
Nomenclatural type
NCBI Assembly: GCA_965194505.1
Reference strain
Strain sc|0040540: MiE-11 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Type species is Hahnella aquatica MiE-11 (GCA_965194505.1), isolated from 5 m depth from Lake Milada, Czechia (date: 2019-07-23), via high-throughput dilution to extinction cultivation. MiE-11 has a genome size of 1.8 Mbp with a genomic GC content of 61.8%, contains 3 rRNA genes and 43 tRNAs. The genome is complete, consisting of a circular chromosome. The genome contains genes encoding anoxygenic aerobic phototrophy (pufABLM). Genes for flagellar assembly were annotated. Pathways for thiosulfate oxidation (Sox pathway), glycolate oxidation, and the biosynthesis of all amino acids were predicted. Further, pathways for thiamine, riboflavin, NAD, pantothenate, coenzyme A, THF, and heme biosynthesis were identified. The closest cultivated relatives are the undescribed Burkholderiales bacterium LSUCC0115 (GCA_009646425.1), with an average amino acid identity of 67.3% and average nucleotide identity of 71.7% and another newly proposed species, Hahnella lacustris MsE-M47 (GCA_965194655.1), with an AAI of 65.8% and an ANI of 70.4%. The closest validly described relative is Limnobacter thiooxidans CS-K2 (GCF_036323495.1) with an AAI of 54.41% and an ANI of 66.9%. Current GTDB classification (R220): d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae_A; g__UBA2463; s__. 
Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Burkholderiales » Burkholderiaceae » Hahnella » Hahnella aquaticaTs
Parent
Hahnella

Genomics

Accession
NCBI Assembly:GCA_965194505.1
Cultures
Strain sc|0040540
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
985.8 ×
Source
Other features
  • G+C Content: 61.8%
  • Coding Density: 95.01%
  • Codon Table: 11
  • N50: 1,834,640 bp
  • Contigs: 1
  • Largest Contig: 1,834,640 bp
  • Assembly Length: 1,834,640 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome of a culture that was harvested by filtration on 0.22 µm filters; DNA was extracted with the Quiagen MagAttract HMW DNA kit. Sequencing was done with Illuminia Novaseq 6000, trimming of reads with BBMap v36.x, assembly with SPAdes v3.12.0. The genome was manually curated to a circular chromosome in Geneious 10 by repeated rounds of read mapping. Completeness and contamination were assessed with CheckM.
Automated checks
Complete

Last modified 10 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Salcher, Michaela M
Submitted
8 months ago by Salcher, Michaela M
Curators
Endorsed
6 months ago by Rodriguez-R, Luis M
Validated
3 months ago by Rodriguez-R, Luis M
Date of priority
2025-08-28 03:23 PM (UTC)

Publications
1

Citation Title
Salcher et al., 2025, Nature Communications Bringing the uncultivated microbial majority of freshwater ecosystems into culture
Effective publication



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