Hahnella lacustris


Citation

Formal styling
Hahnella lacustris Salcher et al., 2025
Effective publication
Salcher et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:o5wsiwof (validated)
Canonical URL
https://seqco.de/i:49117

Nomenclature

Rank
Species
Syllabication
la.cus'tris
Etymology
N.L. fem. adj. lacustris, pertaining to a lake
Nomenclatural type
NCBI Assembly: GCA_965194655.1
Reference strain
Strain sc|0038792: MsE-M47 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Type species is Hahnella lacustris MsE-M47 (GCA_965194655.1), isolated from 5 m depth from Lake Most, Czechia (date: 2019-10-01), via high-throughput dilution to extinction cultivation. MsE-M47 has a genome size of 2.2 Mbp with a genomic GC content of 59.2%, contains 3 rRNA genes and 42 tRNAs. The genome is complete, consisting of a circular chromosome. The genome is complete, consisting of a circular chromosome. The genome contains genes encoding anoxygenic aerobic phototrophy (pufABLM) and the complete Calvin cycle for carbon fixation via RuBisCO. Genes for flagellar assembly and chemotaxis were annotated. Pathways for taurine degradation, thiosulfate oxidation (Sox pathway), glycolate oxidation, and the biosynthesis of all amino acids were predicted. Further, pathways for riboflavin, NAD, pantothenate, coenzyme A, biotin, THF, and heme biosynthesis were identified. The closest cultivated relative is the undescribed Burkholderiales bacterium LSUCC0115 (GCA_009646425.1), with an average amino acid identity of 67% and average nucleotide identity of 70.6% and another newly proposed species, Hahnella aquatica MiE-11 (GCA_965194505.1), with an AAI of 65.8% and an ANI of 70.4%. The closest validly described relative is Limnobacter thiooxidans CS-K2 (GCF_036323495.1) with an AAI of 53.55% and an ANI of 66.44%. Current GTDB classification (R220): d__Bacteria; p__Pseudomonadota; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae_A; g__UBA2463; s__UBA2463 sp945862985.

Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Burkholderiales » Burkholderiaceae » Hahnella » Hahnella lacustris
Parent
Hahnella

Genomics

Accession
NCBI Assembly:GCA_965194655.1
Cultures
Strain sc|0038792
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
713.5 ×
Source
Other features
  • G+C Content: 59.2%
  • Coding Density: 96.38%
  • Codon Table: 11
  • N50: 2,227,722 bp
  • Contigs: 1
  • Largest Contig: 2,227,722 bp
  • Assembly Length: 2,227,722 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome of a culture that was harvested by filtration on 0.22 µm filters; DNA was extracted with the Quiagen MagAttract HMW DNA kit. Sequencing was done with Illuminia Novaseq 6000, trimming of reads with BBMap v36.x, assembly with SPAdes v3.12.0. The genome was manually curated to a circular chromosome in Geneious 10 by repeated rounds of read mapping. Completeness and contamination were assessed with CheckM.
Automated checks
Complete

Last modified 6 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Salcher, Michaela M
Submitted
8 months ago by Salcher, Michaela M
Curators
Endorsed
6 months ago by Rodriguez-R, Luis M
Validated
3 months ago by Rodriguez-R, Luis M
Date of priority
2025-08-28 03:23 PM (UTC)

Publications
1

Citation Title
Salcher et al., 2025, Nature Communications Bringing the uncultivated microbial majority of freshwater ecosystems into culture
Effective publication



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