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Agrobacterium fabrum

Citation

Formal styling
Agrobacterium fabrum Lassalle et al., 2011 (Pt. Hamilton, Fall, 1971) (priority 2025)
Effective publication
Lassalle et al., 2011
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:a5syfcw5 (validated)
Canonical URL
https://seqco.de/i:49622

Nomenclature

Rank
Species
Syllabication
fa'brum
Etymology
L. neut. adj. fabrum, of a craftsman or artisan and their work; in reference to the use of C58 to construct genetically modified plants, while also honoring the pioneer isolator of Agrobacterium (Smith) as well as other scientists with a Faber-related name in different languages, for example, Smith, Schmidt, Smet, Faivre, Farrand, Faure, Herrera, etc., who studied various aspects of Agrobacterium biology
Nomenclatural type
NCBI Assembly: GCF_000092025.1
Paratypes
Reference strain
Strain sc|0040502: C58 = ATCC 33970 = LMG 287 (Cat. ) = CIP 104333 = LMD 85.29 = NCCB 85029 (Cat. ) = CGMCC 1.1488 = CFBP 1903 = CFBP 6552 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Agrobacterium » Agrobacterium fabrum
Parent
Agrobacterium ncbigtdb

Genomics

Accession
NCBI Assembly:GCF_000092025.1
Cultures
Strain sc|0040502
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 4 16S rRNAs (up to 100.0%)
  • 3 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
49.0 ×
Source
Other features
  • G+C Content: 59.0%
  • Coding Density: 87.69%
  • Codon Table: 11
  • N50: 2,841,580 bp
  • Contigs: 4
  • Largest Contig: 2,841,580 bp
  • Assembly Length: 5,674,258 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 9 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago and claimed over 1 year ago by Van Lill, Melandre
Submitted
Over 1 year ago by Van Lill, Melandre
Curators
Validated
About 1 year ago by St. John, Emily
Date of priority
2025-03-20 05:00 AM (UTC)

Publications
3

Citation Title
Lassalle et al., 2011, Genome Biology and Evolution Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens
Effective publication
Goodner et al., 2001, Science Genome Sequence of the Plant Pathogen and Biotechnology Agent Agrobacterium tumefaciens C58
Hamilton, Fall, 1971, Experientia The loss of tumor-initiating ability inAgrobacterium tumefaciens by incubation at high temperature


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seqco.de/r:a5syfcw5