Mesorhizobium denitrificans


Citation

Formal styling
Mesorhizobium denitrificans Siddiqi et al., 2019 (priority 2025)
Effective publication
Siddiqi et al., 2019
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqez6bw7 (validated)
Canonical URL
https://seqco.de/i:49628

Nomenclature

Rank
Species
Syllabication
de.ni.tri.fi'cans
Etymology
N.L. neut. part. adj. denitrificans, denitrifying
Nomenclatural type
NCBI Assembly: GCF_003403035.1
Reference strain
Strain sc|0040539: LA-28 = KACC 19675 = LMG 30806 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are facultative anaerobic, oxidase negative, and catalase positive. Colonies grown on R2A agar are opaque, circular, and milky coloured. Growth occurs at 18–40°C in the presence of 1–4% NaCl (w/v) and at pH 6–8. Optimum growth occurs at 30°C and pH 6.5–7.0 in the absence of NaCl. In both aerobic and anaerobic conditions it reduces nitrate to nitrite. Negative for the hydrolysis of casein, DNase, starch, Tween 80, and Tween 20. The strain grows well on R2A agar medium, whereas it weakly grows on TSA, NA, and LB agar media, but did not grow on DNAse agar and MacConkey agar. In commercial API (ZYM, 20NE, and 32GN) kits positive for arginine dihydrolase, urease, esculin hydrolysis, alkaline phosphatase, esterase, esterase lipase, leucine arylamidase, trypsin, acid phosphatase, naphthol-AS-BI-phosphohydrolase, α-glucosidase, β-glucosidase, D-glucose, L-arabinose, D-mannose, D-mannitol, D-maltose, L-fucose, D-sorbitol, L-arabinose, valerate, L-histidine, 2-ketogluconate, 3-hydroxy-butyrate, L-proline, L-rhamnose, N-acetyl-D-glucosamine, D-ribose, inositol, D-sucrose, suberate, acetate, L-lactate, alanine, and glycogen. Negative for indole production, glucose acidification, gelatin hydrolysis, α-galactosidase, β-galactosidase, β-glucuronidase, lipase, valine arylamidase, cystine arylamidase, α-chymotrypsin, gluconate, caprate, adipate, malate, citrate, phenyl-acetate, salicin, D-melibiose, propionate, caprate, 4-hydroxy-benzoate, itaconate, malonate, 5-ketogluconate, 3-hydroxy-benzoate, L-serine, α-mannosidase, and α-fucosidase. The predominant quinone is Q-10. The major cellular fatty acids are C16:0, C19:0 cyclo ω8c, and summed feature 8. The polar lipids are PG, PE, PME, and PC, and one unidentified phospholipid PL. The DNA G+C content of genomic DNA is 61.2 mol%. The type strain, LA-28 T (= KACC 19675T = LMG 30806 T) was isolated from the sludge of wastewater treatment plant Hanam city, South Korea.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Phyllobacteriaceae » Mesorhizobium » Mesorhizobium denitrificans
Parent
Mesorhizobium ncbi

Genomics

Accession
NCBI Assembly:GCF_003403035.1
Cultures
Strain sc|0040539
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 1.9%
  • Quality: 89.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
19.0 ×
Source
Other features
  • G+C Content: 58.4%
  • Coding Density: 90.74%
  • Codon Table: 11
  • N50: 248,341 bp
  • Contigs: 45
  • Largest Contig: 534,275 bp
  • Assembly Length: 4,375,801 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 11 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
12 months ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Validated
6 months ago by St. John, Emily
Date of priority
2025-03-20 07:42 PM (UTC)

Publications
1

Citation Title
Siddiqi et al., 2019, Journal of Microbiology Mesorhizobium denitrificans sp. nov., a novel denitrifying bacterium isolated from sludge
Effective publication



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