Pararhizobium mangrovi


Citation

Formal styling
Pararhizobium mangrovi Li et al., 2021 (priority 2025)
Effective publication
Li et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:tcuj7d0e (validated)
Canonical URL
https://seqco.de/i:49631

Nomenclature

Rank
Species
Syllabication
man.gro'vi
Etymology
N.L. gen. n. mangrovi, of mangrove, where the bacterium was isolated
Nomenclatural type
NCBI Assembly: GCF_006516965.1
Reference strain
Strain sc|0039563: BGMRC 6574 = KCTC 72636 = CGMCC 1.16783 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are motile, Gram-stain-negative, and flagellated short rods measuring approximately 0.3–0.6 × 0.6–0.9 μm. Colonies appear round, convex, and smooth with light pink color on ISP2 agar plates. Oxidase and catalase are positive. Growth occurs at 25–37 °C (optimum, 28 °C), pH 5.0–10.0 (optimum, pH 7.0), and 3.0–8.0% (w/v) NaCl (optimum, 3%). In API 20E tests, strain BGMRC 6574T was positive for citrate utilization test, VP test, gelatin liquefaction, glucose fermentation, rhamnose, arabinose, oxidase, and NO2. The API ZYM system of enzyme detection revealed that the isolated strain is positive for alkaline phosphatase, esterase (C4), esterase lipase (C8), lipase (C14), leucine arylamidase, valine arylamidase, cystine arylamidase, trypsin, chymotrypsin, acid phosphatase, naphthol-ASBI-phosphohydrolase, α-galactosidase, β-galactosidase, β-glucuron, α-glucanase, and β-glucosidase. In the API 50CH, strain BGMRC 6574T produced acid from D-gentiobiose and ferric citrate of aesculin. The other carbon sources did not produce acid or ferment in new strain. The major cellular fatty acid is C19:0 cyclo ω8c. The predominant respiratory quinone is ubiquinone-10. The major polar lipids are a single phosphatidylcholine (PC), seven unidentified phospholipids (PL3–7), three unidentified ninhydrin-positive phospholipids (NPL1–3), and two unidentified lipids (L1–2). The DNA G+C content of the type strain is 64.7 mol%.

The type strain is BGMRC 6574T (=KCTC 72636T = CGMCC 1.16783), isolated from mangrove stems collected from Hainan province, China. The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene and genome sequences of strain BGMRC 6574T are MN006421 and VHLH00000000, respectively.

Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Pararhizobium » Pararhizobium mangrovi
Parent
Pararhizobium ncbi
Alternative placements

Genomics

Accession
NCBI Assembly:GCF_006516965.1
Cultures
Strain sc|0039563
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.1%
  • Contamination: 0.9%
  • Quality: 93.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
67.0 ×
Source
Other features
  • G+C Content: 64.7%
  • Coding Density: 88.87%
  • Codon Table: 11
  • N50: 103,709 bp
  • Contigs: 70
  • Largest Contig: 366,854 bp
  • Assembly Length: 3,926,315 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 6 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
12 months ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Validated
6 months ago by St. John, Emily
Date of priority
2025-03-20 07:55 PM (UTC)

Publications
2

Citation Title
Ma et al., 2023, Frontiers in Microbiology Phylogenomic reappraisal of the family Rhizobiaceae at the genus and species levels, including the description of Ectorhizobium quercum gen. nov., sp. nov
Li et al., 2021, Current Microbiology Pararhizobium mangrovi sp. nov., Isolated From Aegiceras corniculatum Stem
Effective publication



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