Rhizobium alarense


Citation

Formal styling
Rhizobium alarense Shen et al., 2022 (priority 2025)
Effective publication
Shen et al., 2022
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xsogat83 (validated)
Canonical URL
https://seqco.de/i:49635 Copy

Nomenclature

Rank
Species
Syllabication
a.la.ren'se
Etymology
N.L. neut. adj. alarense, pertaining to Alar, a city in Northwest China, where the type strain was isolated
Nomenclatural type
NCBI Assembly: GCF_021555155.1
Reference strain
Strain sc|0038879: TRM95111 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells on YMA agar plates were circular, smooth, convex, white colored and rod shaped (1.05–1.10 μm in length and 0.26–0.30 μm in width) for 3 days at 25 °C. Growth occurred at 12–37 °C (optimum, 25 °C); growth occurred at pH 6.0–9.0 (optimum, pH 7.0) and 0–3% (w/v) NaCl (optimum, 1%). The following substrates were utilized on Biolog GENIII microplates: D-arabitol, acetic acid, D-aspartic acid, L-aspartic acid, D-cellobiose, i-erythritol, d-fructose, l-fructose, d-fructose-6-PO4, d-galactose, gentiobiose, α-d-glucose, d-glucose-6-PO4, d-gluconic acid, d-glucuronic acid, l-glutamic acid, glycerol, 3-methyl-glucose, myo-inositol, inosine, α-d-lactose, d-maltose, d-mannose, d-mannitol, d-melibiose, d-raffinose, l-rhamnose, stachyose, sucrose, d-trehalose, d-turanose, pectin, N-acetylneuraminic acid, α-keto-glutaric acid, d-malic acid, l-malic acid, mucic acid, propionic acid, quinic acid, d-salicin, d-saccharic acid, l-alanine, l-arginine, N-acetyl-d-galactosamine, N-acetyl-d-glucosamine, N-acetyl-β-d-mannosamine, β-methyl-d-glucoside, glucuronamide, l-histidine, l-serine, l-pyroglutamic and urea. The nitrate reduction, oxidase, starch hydrolysis and urease were positive. H2S production, lipase, catalase production, melanin production, milk coagulation and peptonization were negative. Cellulose and tween 20, 40, 60 and 80 were hydrolyzed. The whole-cell sugars consisted mainly of arabinose, glucose and ribose. Contained meso-diaminopimelic acid as the diagnostic cell wall amino acid. The detected polar lipids were unidentified aminophospholipids, unidentified phospholipids, phosphatidylcholine, unidentified lipids and phospholipids of unknown structure. The predominant menaquinone was identified as Q-10. Major fatty acids (> 5% of the total amounts) were Summed Feature 8 (C18:1ω7c and/or C18:1 ω6c), C19:0 cyclo ω8c, C16:0 and C18:1 ω7c 11-methyl. Resistant to ampicillin, chloramphenicol, erythromycin, gentamicin, nalidixic acid, tetracycline and vancomycin, but sensitive to amikacin, kanamycin and streptomycin.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Rhizobium » Rhizobium alarense
Parent
Rhizobium ncbi

Genomics

Accession
NCBI Assembly:GCF_021555155.1
Cultures
Strain sc|0038879
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
200.0 ×
Source
Other features
  • G+C Content: 64.9%
  • Coding Density: 88.81%
  • Codon Table: 11
  • N50: 47,105 bp
  • Contigs: 201
  • Largest Contig: 129,904 bp
  • Assembly Length: 5,204,801 bp
  • Ambiguous Assembly Fraction: 0.2%
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Van Lill, Melandre, created 5 months ago and claimed about 1 month ago
Submitted by
Van Lill, Melandre about 1 month ago
Curators
Validated by
Rodriguez-R, Luis M 19 days ago
Date of priority
2025-03-20 05:09 PM (UTC)

Publications
1

Citation Title
Shen et al., 2022, Archives of Microbiology Rhizobium alarense sp. nov. and Rhizobium halophilum sp. nov. isolated from the nodule and rhizosphere of Lotus japonicus
Effective publication



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