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Pelagilacustribacter hypolimneticusTs

Citation

Formal styling
Pelagilacustribacter hypolimneticusTs Fernandes et al., 2025
Effective publication
Fernandes et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:gnukuc44 (validated)
Canonical URL
https://seqco.de/i:49885

Nomenclature

Rank
Species
Syllabication
hy.po.lim.ne'ti.cus
Etymology
G. hypo, below, under; N.L. neut. adj. limneticus, of a lake; N.L. masc. adj. hypolimneticus, referring to the deep zone of lakes, the hypolimnion
Nomenclatural type
NCBI Assembly: GCA_965235125.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Type genome is Pelagilacustribacter hypolimneticus TrH-25oct19-165 (GCA_965235125.1), a metagenome-assembled genome (MAG) assembled from 150 m depth from Traunsee, Austria (date: 2019-10-25). TrH-25oct19-165 has a genome size of 1 Mbp with a genomic GC content of 29.2% and contains 19 tRNAs. The genome is of high quality, consisting of 87 contigs, with a completeness of 93.4%, contamination of 4.8% and strain heterogeneity of 20% as assessed with checkM. The metagenome was assembled with megahit from short-read sequencing (Illumina NovaSeq). The closest cultivated relative is Cosmipelagibacter malulaniensis HIMB058 (GCA_000419545.1), with an average amino acid identity of 58.8% and average nucleotide identity of 68.1%. Current GTDB classification (R220): d__Bacteria; p__Pseudomonadota; c__Alphaproteobacteria; o__Pelagibacterales; f__Pelagibacteraceae; g__SYDM01; s__SYDM01 sp005801485.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Pelagibacterales » Pelagibacteraceae » Pelagilacustribacter » Pelagilacustribacter hypolimneticusTs
Parent
Pelagilacustribacter

Genomics

Accession
NCBI Assembly:GCA_965235125.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.4%
  • Contamination: 4.8%
  • Quality: 69.4
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 16 amino acids
Sequencing depth
17.5299 ×
Source
Other features
  • G+C Content: 29.2%
  • Coding Density: 96.41%
  • Codon Table: 11
  • N50: 16,455 bp
  • Contigs: 87
  • Largest Contig: 51,687 bp
  • Assembly Length: 1,035,426 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
This is a metagenome-assembled genome (MAG) that was assembled with megahit and contigs ≥3 kbp were used for hybrid binning (tetranucleotide frequencies and coverage data) using MetaBAT2 with default parameters. Completeness and contamination were assessed with CheckM. rRNA genes were predicted with barrnap v0.9, tRNA genes were predicted with tRNAscan v1.4. Although the MAG is of high quality (93.4% completeness), it does not contain any rRNA genes.
Automated checks
Complete
See additional details
Last modified 5 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
8 months ago by Salcher, Michaela M
Submitted
3 months ago by Salcher, Michaela M
Curators
Validated
2 months ago by Rodriguez-R, Luis M
Date of priority
2025-08-28 03:13 PM (UTC)

Publications
1

Citation Title
Fernandes et al., 2025, Nature Microbiology Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium
Effective publication


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seqco.de/r:gnukuc44