Methylosemipumilus


Citation

Formal styling
Methylosemipumilus corrig. (ex Salcher et al., 2015) Salcher et al., 2019 (priority 2015)
Effective publication
Salcher et al., 2019
Original (not valid) publication
Salcher et al., 2015
Corrigendum
Salcher et al., 2019 from “Candidatus Methylopumilus” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:y_q1qhwb (validated)
Canonical URL
https://seqco.de/i:49942

Nomenclature

Rank
Genus
Inferred stem
Methylosemipumil-
Syllabication
Me.thy.lo.se.mi.pu.mi'lus
Etymology
N.L. neut. n. methyl, pertaining to the methyl group; L. pref. semi-, half; L. masc. n. pumilus, dwarfish; N.L. masc. n. Methylosemipumilus, half-dwarfish methyl (group oxidizing) organism, pertaining to an intermediated genome size
Nomenclatural type
Methylosemipumilus turicensisTs
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Consists of one species, Methylosemipumilus turicensis (GCF_000953015.1), that was initially proposed as ‘Candidatus Methylopumilus turicensis’ in Salcher et. al. 2015 and later changed to Methylosemipumilus turicensis in Salcher et al. 2019. Also known as PRD01a001B from 16S rRNA gene based studies. Methylosemipumilus has a relatively small genome size (<1.8 Mb) but not as small as Methylopumilus (1.3-1.4 Mb), which – together with improved genomic analyses – led to the reclassification to Methylosemipumilus. The closest cultivated relatives are Methylotenera sp. L2L1 (GCF_000744605.1) with an average amino acid identity of 67.45% and average nucleotide identity of 70.55% and Methylovorus sp. MP688 (GCF_000183115.1) with an AAI of 69.37% and an ANI of 69.42%, while the genus Methylopumilus is more distantly related (AAI of 61.5-62.2% and ANI of 66.4-66.9%). Methylosemipumilus are aerobic methylotrophs containing pathways for methanol oxidation (Xox), the RuMP cycle and the tetrahydromethanopterin (H4MPT) pathway for formaldehyde oxidation. Methylosemipumilus are found in the plankton of lakes in relatively low abundances. The so far only strain was isolated via dilution-to extinction cultivation by using autoclaved lake water, no growth is observed in rich medium or on agar plates (Salcher et al. 2015). Therefore, the strain was not submitted to a culture collection because these bacteria are hard to maintain, i.e., they are very slowly growing, reach low densities in liquid culture, and do not grow on agar plates.
Classification
Bacteria » Pseudomonadota » Betaproteobacteria » Nitrosomonadales » Methylophilaceae » Methylosemipumilus
Parent
Methylophilaceae assigned in Salcher et al., 2019
Children (1)
Pseudonyms
  • Candidatus Methylopumilus (Original, corrected name)

Metadata

Outside links and data sources
Search sequences
Local history
Registered
7 months ago by Salcher, Michaela M
Submitted
7 months ago by Salcher, Michaela M
Curators
Validated
3 months ago by Palmer, Marike
Date of priority
2015-11-01 12:00 AM (UTC)   Important note

Publications
3

Citation Title
Oren et al., 2020, International Journal of Systematic and Evolutionary Microbiology Lists of names of prokaryotic Candidatus taxa
Salcher et al., 2019, The ISME Journal Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae
Effective publication
Corrigendum
Assigned this taxon
Salcher et al., 2015, The ISME Journal The ecology of pelagic freshwater methylotrophs assessed by a high-resolution monitoring and isolation campaign
Original (not valid) publication



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