Planktophila rimovensis


Citation

Formal styling
Planktophila rimovensis Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51469

Nomenclature

Rank
Species
Syllabication
ri.mo.ven'sis
Etymology
N.L. fem. adj. rimovensis, of Rimov, pertaining to the Římov Reservoir, Czech Republic, the isolation source of the species
Nomenclatural type
Genome sc|0004109 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named ‘rimovensis’ after the isolation source, the eutrophic Římov Reservoir, Czech Republic.
Brief description. Planktophila rimovensis MRE-182 (ENA accession number GCA_965267985) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has one circular genome with a size of 1,488,100 bp, a GC content of 48.8%, and a coding density of 95.67%. It encodes one rRNA operon and 37 tRNA genes. It encodes genes for actinorhodopsin and heliorhodopsin but is unable to synthesize retinal de novo due to the absence of the bhl gene. Also, it is auxotrophic for asparagine. Recruitment analysis showed that it was a very rare organism, occurring only in autumn in the Římov Reservoir. The closest relative is Planktophila jirickensis JirE-27 with which it shares an average nucleotide identity of 87.25%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila rimovensis
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267985.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 49.0%
  • Coding Density: 95.18%
  • Codon Table: 11
  • N50: 1,488,100 bp
  • Contigs: 1
  • Largest Contig: 1,488,100 bp
  • Assembly Length: 1,488,100 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
About 5 hours ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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