Planktophila stagnalis


Citation

Formal styling
Planktophila stagnalis Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51479

Nomenclature

Rank
Species
Syllabication
stag.na'lis
Etymology
N.L. fem. adj. stagnalis, of standing water, pond, or swamp
Nomenclatural type
Genome sc|0004095 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. The name ‘stagnalis’ comes from Latin, specifically from ‘stagnum’, which means standing water, pond, or swamp. The suffix -alis is a Latin adjectival ending meaning related to.
Brief description. Planktophila stragnalis MRE-20 (ENA accession number GCA_965267665) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-04-06) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,464,932 bp, a GC content of 47.6%, and a coding density of 96%. It encodes one rRNA operon and 42 tRNA genes. Recruitment analysis indicated its presence in the epilimnion (0.5m depth) of Římov Reservoir, and to a lower extent in the hypolimnion (30m depth). It encodes for a complete pentose phosphate pathway, both an actinorhodopsin and a heliorhodopsin, and for the retinal biosynthesis pathway. The closest isolated relative is Planktophila lacus MMS-IIB-60, with whom it shares an average nucleotide identity of 83.15%. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota; c__Actinomycetia; o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila stagnalis
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267665.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 47.5%
  • Coding Density: 95.3%
  • Codon Table: 11
  • N50: 1,464,932 bp
  • Contigs: 1
  • Largest Contig: 1,464,932 bp
  • Assembly Length: 1,464,932 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
About 5 hours ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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