Planktophila primivernalis


Citation

Formal styling
Planktophila primivernalis Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51470

Nomenclature

Rank
Species
Syllabication
pri.mi.ver.na'lis
Etymology
L. masc. adj. primus, first or foremost; L. fem. adj. vernalis, of spring; N.L. fem. adj. primivernalis, of early spring, due to its occurrence in lakes during spring months
Nomenclatural type
Genome sc|0004084 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named from ‘prima vera’, meaning early spring in Latin, due to its occurrence in lakes during spring months.
Brief description. Planktophila primaveralis MRE-185 (ENA accession number GCA_965267735) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a circular genome with a size of 1,474,018 bp, a GC content of 47.25% and a coding density of 95.94%. It encodes for one rRNA operon and 37 tRNA genes. It encodes actinorhodopsin and heliorhodopsin, as well as the ability to de novo synthesize retinal. It can synthesize most amino acids, except asparagine. The closest relative is Planktophila aestivalis MRE-130 with whom it shares an average nucleotide identity of 86.8%. Recruitment analysis showed that it was present in Římov, Žlutice and Klíčava Reservoirs (Czech Republic) during the spring months, and at the coast of the Baltic Sea. It is usually present in the surface waters, but in Římov Reservoir it is also present in hypolimnion. The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota;c__Actinomycetia; o__Nanopelagicales;f__Nanopelagicaceae;g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila primivernalis
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267735.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 47.5%
  • Coding Density: 95.25%
  • Codon Table: 11
  • N50: 1,474,018 bp
  • Contigs: 1
  • Largest Contig: 1,474,018 bp
  • Assembly Length: 1,474,018 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
5 days ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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