Planktophila polyoliphila


Citation

Formal styling
Planktophila polyoliphila Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51471

Nomenclature

Rank
Species
Syllabication
po.ly.o.li.phi'la
Etymology
N.L. neut. n. polyolum, polyol, referring to the polyol-specific membrane transporters encoded by this species' genome; N.L. fem. adj. suff. -phila, loving; N.L. fem. adj. polyoliphila, a polyol-loving organism
Nomenclatural type
Genome sc|0004108 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named ‘polyoliphila’ from the membrane transporters encoded by the genome of this isolate, specific for polyols.
Brief description. Planktophila polyoliphila MRE-193 (ENA accession number GCA_965267955) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a circular genome of 1,347,427 bp, a GC content of 45% and a coding density of 96.16%. It encodes one rRNA operon and 40 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, but it lacks the last gene involved in the biosynthesis of retinal, the bhl gene. It encodes membrane transporters for erythriol. It is a relatively abundant and widespread species, encountered in rives, reservoirs and lakes, including the Žlutice, Římov and Klíčava Reservoirs (Czech Republic), Lake Bissett (Canada), Lake Michigan (USA), Torrens River (Australia) etc. The closest cultivated relative to this species is Planktophila limneticus MMS-VB-114, sharing an average nucleotide identity of 81.9%. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia; o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila polyoliphila
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267955.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 45.0%
  • Coding Density: 95.5%
  • Codon Table: 11
  • N50: 1,347,017 bp
  • Contigs: 1
  • Largest Contig: 1,347,017 bp
  • Assembly Length: 1,347,017 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
2 days ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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