Planktophila maxigenoma


Citation

Formal styling
Planktophila maxigenoma Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51472

Nomenclature

Rank
Species
Syllabication
ma.xi.ge.no'ma
Etymology
N.L. fem. adj. maxigenoma, an arbitrarily formed name due to its genome size – it has the biggest genome of any Planktophila isolates at time of isolation
Nomenclatural type
Genome sc|0004110 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named ‘maxigenoma’ due to its genome size – it has the biggest genome of any Planktophila isolates.
Brief description. Planktophila maxigenoma MRE-196 (ENA accession number GCA_965267625) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,500,077 bp, a GC content of 48.7%, and a coding density of 95.73%. It encodes one rRNA operon and 38 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, as well as the capacity to de novo synthesize retinal. It encodes genes involved in pili assembly and maturation. The closest isolated species is Planktophila jirickensis JirE-27 with whom it shares an average nucleotide identity of 80.3%. Recruitment analysis showed that it is a very rare species, encountered only in the Římov Reservoir, and particularly in the hypolimnion (30m depth). The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila maxigenoma
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267625.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 48.5%
  • Coding Density: 95.06%
  • Codon Table: 11
  • N50: 1,500,077 bp
  • Contigs: 1
  • Largest Contig: 1,500,077 bp
  • Assembly Length: 1,500,077 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
About 5 hours ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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