Planktophila landstejnensis


Citation

Formal styling
Planktophila landstejnensis Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51481

Nomenclature

Rank
Species
Syllabication
lan.dstej.nen'sis
Etymology
N.L. fem. adj. landstejnensis, of Landstejn, named for Landštejn Reservoir (Czech Republic), the place from which the representative strain was isolated
Nomenclatural type
Genome sc|0004097 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named after Landštejn Reservoir (Czech Republic), the place from which the representative strain was isolated.
Brief description. The representative strain of Planktophila landstejnensis Bala-138 (ENA accession number GCA_965267445), was isolated from Vistula River, Poland (date: 2022-07-05). Other 15 isolates of the same species were obtained in our laboratory, most of them from Vistula River and Lagoon, and the coast of the Baltic Sea (date: 2022-07-05), as well as from the Landštejn Reservoir, Czech Republic (date: 2020-06-16). The closest isolated species is Planktophila ubiquitis MKE-26, with which it shares an average nucleotide identity of 93.2%. Planktophila landstejnensis strains shared 100% average nucleotide identity among themself. The circular genome of the Bala-138 strain has a size of 1,431,437 bp, a GC content of 46.5%, and a coding density of 95.8%. It encodes one rRNA operon and 38 tRNA genes. The oxidative part of the pentose phosphate pathway is not encoded by any strain of this species. The recruitment analysis indicates that the species is distributed worldwide in freshwaters, and sometimes in high abundances, including places such as Lake Loclat and Zurich (Switzerland), Torrens River (Australia), Lake Biwa (Japan), Římov, Žlutice and Klíčava Reservoirs (Czech Republic), Lake Michigan and Mendota, as well as the Delaware River and Bay (USA), and boreal lakes Bissett and Roche (Canada). The Current GTDB classification (r220) is d__Bacteria; p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila landstejnensis
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267445.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 46.5%
  • Coding Density: 95.35%
  • Codon Table: 11
  • N50: 1,431,437 bp
  • Contigs: 1
  • Largest Contig: 1,431,437 bp
  • Assembly Length: 1,431,437 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
2 days ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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