Planktophila perrara


Citation

Formal styling
Planktophila perrara Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51473

Nomenclature

Rank
Species
Syllabication
per'ra.ra
Etymology
N.L. fem. adj. perrara, very rare, indicating its low abundance in the environment
Nomenclatural type
Genome sc|0004107 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named ‘perrarus’, from Latin prefix ‘per-’ meaning very and ‘rarus’ meaning rare, indicating its low abundance in the environment.
Brief description. Planktophila perrarus MRE-203 (ENA accession number GCA_965268015) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,318,636 bp, a GC content of 48.28%, and a coding density of 95.4%. It encodes one rRNA operon and 38 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, as well as the capacity to de novo synthesize retinal. It is extremely rare in the environment and in low abundances; recruitment analysis in >1700 metagenomes showed that it was never found with a coverage per Gb higher than 1. In low abundances, it was recovered from Lake Ontario (USA), the coast of the Baltic Sea and the hypolimnion of Římov Reservoir (Czech Republic). The closest relative is Planktophila hypolimnetica MRH-37, with whom shared an average nucleotide identity of 75.95%. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila perrara
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965268015.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 48.5%
  • Coding Density: 94.84%
  • Codon Table: 11
  • N50: 1,318,636 bp
  • Contigs: 1
  • Largest Contig: 1,318,636 bp
  • Assembly Length: 1,318,636 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
About 5 hours ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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