Planktophila calida


Citation

Formal styling
Planktophila calida Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51477

Nomenclature

Rank
Species
Syllabication
ca.li'da
Etymology
L. fem. adj. calida, warm, hot, referring to the genome of this organism being recovered from a hot spring
Nomenclatural type
Genome sc|0004093 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named after the Latin word ‘calidus’ or ‘calida’, meaning warm or hot; it refers to the preference of this species for warm waters and its maximum abundance during summer months. 
Brief description. Planktophila calida RoE-11 (ENA accession number GCA_965267875) was isolated from the epilimnion (5m depth) of eutrophic Lake Roś, Poland (date: 2020-08-31) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,415,600 bp, a GC content of 48.9%, and a coding density of 95.9%. It encodes one rRNA operon and 38 tRNA genes. It distributed worldwide and in relatively high abundance, including the Delaware River and Bay (USA), Lake Breiter Luzin, Stechlin and Tiefwaren (Germany), Lake Micmac (Canada), Lake Loclat and Zurich (Switzerland) and well as in the Římov, Klíčava and Žlutice Reservoirs (Czech Republic). The closest isolated relative is Planktophila thermolimna MRE-226 with which it shared an average nucleotide identity of 89.53%. Planktophila calida RoE-11 encodes for a complete pentose phosphate pathway, both an actinorhodopsin and heliorhodopsin, and for the retinal biosynthesis pathway. It can synthesize all amino acids except asparagine. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota; c__Actinomycetia;o__Nanopelagicales; f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila calida
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267875.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 49.0%
  • Coding Density: 95.31%
  • Codon Table: 11
  • N50: 1,415,600 bp
  • Contigs: 1
  • Largest Contig: 1,415,600 bp
  • Assembly Length: 1,415,600 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
1 day ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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