Planktophila fontis


Citation

Formal styling
Planktophila fontis Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51480

Nomenclature

Rank
Species
Syllabication
fon'tis
Etymology
L. masc. gen. n. fontis, of a spring
Nomenclatural type
Genome sc|0004096 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named ‘fontis’ from the genitive singular Latin form of ‘fons’, meaning fresh water source.
Brief description. Planktophila fontis LanE-86 (ENA accession number GCA_965267645) was isolated from the epilimnion (5m depth) of Landštejn Reservoir, Czech Republic (date: 2020-07-30) and it is the representative genome for the species. The strain MRE-249 (GCA_965268255) belongs to the same species and it was isolated from the Římov Reservoir (Czech Republic) on 2021-11-01; these two strains share an average nucleotide identity of 96.87%. The circular genome of the representative isolate has 1,465,205 bp, a GC content of 47.7%, and a coding density of 96%. It encodes one rRNA operon and 41 tRNA genes. The closest cultivated species to is Planktophila dulcis Pe-89, with whom it shares an average nucleotide identity of 92%. Recruitment analysis indicates that P. fontis is relatively widespread and abundant in the environment, including the Delaware River and Bay (USA), Lake Stechlin, Tiefwaren and Breiter Luzin (Germany), Lake Inawashiro (Japan), Římov and Landštejn Reservoirs (Czech Republic), and boreal lakes such as Lake Botsford, Paradise, Simoncouche (Canada) and Lake Lomtjärnan and Odrolstjärnan (Sweden). It encodes for a complete pentose phosphate pathway, both an actinorhodopsin and a heliorhodopsin, and for the retinal biosynthesis pathway. The strains differ in their ability to synthesize amino acids. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae;  g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila fontis
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267645.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 47.5%
  • Coding Density: 95.47%
  • Codon Table: 11
  • N50: 1,465,205 bp
  • Contigs: 1
  • Largest Contig: 1,465,205 bp
  • Assembly Length: 1,465,205 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
About 5 hours ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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