Planktophila toyensis


Citation

Formal styling
Planktophila toyensis Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51478

Nomenclature

Rank
Species
Syllabication
to.y.en'sis
Etymology
N.L. fem. adj. toyensis, of Toya, named for the lake from which the organism was isolated, Lake Toya, Japan
Nomenclatural type
Genome sc|0004094 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named ‘toyensis’ after the lake from which it was isolated, Lake Toya, Japan.
Bried description. Planktophila toyensis ToyE-15 (ENA accession number GCA_965267865) was isolated from the epilimnion (5m depth) of the oligotrophic Lake Toya, Japan (date: 2022-09-29) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,367,129 bp, a GC content of 47.8%, and a coding density of 95.9%. It encodes one rRNA operon and 38 tRNA genes. It is distributed worldwide and in relatively high abundance, including the Delaware River and Bay (USA), Lake Toya and Inawashiro (Japan), Římov Reservoir (Czech Republic), Lake Zurich (Switzerland), and especially in boreal lakes such as Lake Eden, Paradise, Montjoie, and Nukko (Canada), Lake Odrolstjärnen and Lomtjärnam (Sweden), and Lake Lovojärvi (Finland). The closest isolated relative is Planktophila landstejnensis MRE-249 with which it shared an average nucleotide identity of 91.4%. It encodes for a complete pentose phosphate pathway, both an actinorhodopsin and a heliorhodopsin, and for the retinal biosynthesis pathway. It can synthesize all amino acids except asparagine. It can produce a range of vitamins, including riboflavin (B2). The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila toyensis
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267865.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 48.0%
  • Coding Density: 95.16%
  • Codon Table: 11
  • N50: 1,367,129 bp
  • Contigs: 1
  • Largest Contig: 1,367,129 bp
  • Assembly Length: 1,367,129 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
2 days ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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