Planktophila thermolimnae


Citation

Formal styling
Planktophila thermolimnae Chiriac et al., 2025 (priority 2026)
Effective publication
Chiriac et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pdwftyg3 (validated)
Canonical URL
https://seqco.de/i:51474

Nomenclature

Rank
Species
Syllabication
ther.mo.lim'na.e
Etymology
Gr. masc. adj. thermos, hot; Gr. fem. n. limne, lake; N.L. fem. adj. thermolimnae, of a hot lake or standing body of water
Nomenclatural type
Genome sc|0004090 Ts
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Etymology. It is named ‘thermolimna’ after the Greek words ‘thermo’ meaning heat or warm, and ‘limna’, referring to a lake or standing water.
Bried description. Planktophila thermolimna MRE-226 (ENA accession number GCA_965267965) was isolated from the epilimnion (0.5m depth) of Římov Reservoir, Czech Republic (date: 2021-11-01) and it is the only isolated representative of the species. It has a complete circular genome with a size of 1,436,178 bp, a GC content of 48.89%, and a coding density of 96%. It encodes for one rRNA operon and 39 tRNA genes. It encodes for both actinorhodopsin and heliorhodopsin, as well as the capacity to de novo synthesize retinal. It encodes for both oxygenic and anoxygenic parts of the pentose phosphate pathway. It can synthesize most amino acids, being auxotrophic for asparagine. Recruitment analysis indicates that the species prefers warm, epilimnetic waters, being present in spring and summer in Římov, Žlutice and Klíčava Reservoirs. The closest isolated relative is Planktophila calida RoE-11, with whom shared an average nucleotide identity of 89.53%. The Current GTDB classification (r220) is d__Bacteria;p__Actinomycetota;c__Actinomycetia;o__Nanopelagicales;f__Nanopelagicaceae; g__Planktophila; s__.
Classification
Bacteria » Actinomycetota » Actinomycetes » Nanopelagicales » Nanopelagicaceae » Planktophila » Planktophila thermolimnae
Parent
Planktophila

Genomics

Accession
NCBI Assembly: GCA_965267965.1 [NCBI | EMBL]
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
1000.0 ×
Source
Other features
  • G+C Content: 49.0%
  • Coding Density: 95.26%
  • Codon Table: 11
  • N50: 1,418,564 bp
  • Contigs: 1
  • Largest Contig: 1,418,564 bp
  • Assembly Length: 1,418,564 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
See full comment
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Layoun, Paul
Submitted
About 1 year ago by Layoun, Paul
Curators
Endorsed
About 1 year ago by Palmer, Marike
Validated
5 days ago by Palmer, Marike
Date of priority
2026-09-15 04:32 PM (UTC)

Publications
1

Citation Title
Chiriac et al., 2025, Microbiome Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
Effective publication



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