Pseudomonas edsoni


Citation

Formal styling
Pseudomonas edsoni Gupta et al., 2026
Effective publication
Gupta et al., 2026
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:frsgkbu1 (validated)
Canonical URL
https://seqco.de/i:55781

Nomenclature

Rank
Species
Syllabication
ed.so'ni
Etymology
N.L. gen. n. edsoni, of Edson, in honor of H.A. Edson, who conducted pioneering work on the microbiology of maple sap in the early 20th century
Nomenclatural type
NCBI Assembly: GCA_053456185.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Pseudomonas edsoni sp. nov. belongs to the Pseudomonas fluorescens subgroup and was isolated from maple sap (Acer saccharum) in Quebec, Canada. The genome size ranges from 6.5–6.6 Mbp with a GC content of ~60.6%. The species is phylogenetically distinct, forming a separate clade supported by ANI values >95% among its members and <95% to other species, and dDDH <70% with all known type strains. Diagnostic genomic traits include:
Presence of a conserved phenazine biosynthetic operon (phzABCDEFG);  Multiple nonribosomal peptide synthetase (NRPS) clusters for cyclic lipopeptides; Genes for hydrogen cyanide (hcnABC) production, often in hybrid clusters with NRPS and metallophore genes; Type VI secretion system (T6SS) gene clusters.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Pseudomonadales » Pseudomonadaceae » Pseudomonas » Pseudomonas edsoni
Parent
Pseudomonas

Genomics

Accession
NCBI Assembly:GCA_053456185.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 97.2%
  • Contamination: 0.9%
  • Quality: 92.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 62.0%)
  • 2 23S rRNAs (up to 46.0%)
  • tRNAs for 20 amino acids
Sequencing depth
76.8 ×
Source
Other features
  • G+C Content: 60.71%
  • Coding Density: 88.51%
  • Codon Table: 11
  • N50: 1,358,459 bp
  • Contigs: 10
  • Largest Contig: 2,982,951 bp
  • Assembly Length: 6,527,647 bp
  • Ambiguous Assembly Fraction: 0.03%
Automated checks
Complete

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
6 months ago by Filteau, Marie
Submitted
About 2 months ago by Filteau, Marie
Curators
Validated
About 1 month ago by Rodriguez-R, Luis M
Date of priority
2026-06-24 04:31 PM (UTC)

Publications
1

Citation Title
Gupta et al., 2026, Systematic and Applied Microbiology Genomic insights and antifungal potential of Pseudomonas species isolated from maple sap, including the novel species Pseudomonas acericola sp. nov. and Pseudomonas edsoni sp. nov
Effective publication



© 2022-2026 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:frsgkbu1