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Authors Eisen

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Eisen, Jonathan A.


Publications
6

CitationNamesAbstract
Nutritional niches of potentially endemic, facultatively anaerobic heterotrophs from an isolated Antarctic terrestrial hydrothermal refugium elucidated through metagenomics Herbold et al. (2024). Environmental Microbiome 19 (1) Australarchaeum erebusense Ts Australarchaeum Fervidibacter antarcticus
Nutritional niches of endemic, facultatively anaerobic heterotrophs from an isolated Antarctic terrestrial hydrothermal refugium elucidated through metagenomics Herbold et al. (2024).
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Draft Genome Sequence of the Endosymbiont “ Candidatus Ruthia magnifica” UCD-CM (Phylum Proteobacteria ) Lee et al. (2014). Genome Announcements 2 (4) Ca. Ruthia magnifica
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Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment Castelle et al. (2013). Nature Communications 4 (1) “Zixiibacteriota” “Woykeibacteriota”
Insights into the phylogeny and coding potential of microbial dark matter Rinke et al. (2013). Nature 499 (7459) 38 Names
Complete genome sequence of Candidatus Ruthia magnifica Roeselers et al. (2010). Standards in Genomic Sciences 3 (2) Ca. Ruthia magnifica

Nutritional niches of endemic, facultatively anaerobic heterotrophs from an isolated Antarctic terrestrial hydrothermal refugium elucidated through metagenomics
Abstract Background Tramway Ridge, a geothermal Antarctic Specially Protected Area (1) (elevation 3340 m) located near the summit of Mount Erebus, is home to a unique community composed of cosmopolitan surface-associated micro-organisms and abundant, poorly understood subsurface-associated microorganisms (2–5). Here, we use shotgun metagenomics to compare the functional capabilities of this community to those found elsewhere on Earth and to infer endemism and metabolic capabilities of abundant subsurface taxa. Results We found that the functional potential in this community is most similar to that found in terrestrial hydrothermal environments (hot springs, sediments) and that the two dominant organisms in the subsurface are primarily endemic. They were found to be facultative anaerobic heterotrophs that likely share a pool of nitrogenous organic compounds while specializing in different carbon compounds. Conclusions Metagenomic insights have provided a detailed understanding of the microbe-based ecosystem found in geothermally heated fumaroles at Tramway Ridge. This approach enabled us to compare Tramway Ridge with other microbial systems, identify endemic taxa and elucidate the key metabolic pathways that may enable specific organisms to dominate the ecosystem.
Draft Genome Sequence of the Endosymbiont “ Candidatus Ruthia magnifica” UCD-CM (Phylum Proteobacteria )
ABSTRACT Here, we present the draft genome of the endosymbiont “ Candidatus Ruthia magnifica” UCD-CM, a member of the phylum Proteobacteria , found from the gills of a deep-sea giant clam, Calyptogena magnifica . The assembly consists of 1,160,249 bp contained in 18 contigs.
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