JSON

Genome sc|0000104

Name

“Aquincolibacterium lacustre”

Database

NCBI Assembly

Accession

GCA_903856085.1

Genomics

Accession
NCBI Assembly:GCA_903856085.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.39%
  • Contamination: 0.65%
  • Quality: 94.14
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 30.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 50.59%
  • Coding Density: 92.47%
  • Codon Table: 11
  • N50: 86,684 bp
  • Contigs: 50
  • Largest Contig: 368,178 bp
  • Assembly Length: 2,360,721 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimated with CheckM v.2.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014-09-05
Location
Geographic Location Latitude: 61.20805555555556
Geographic Location Longitude: 25.11388888888889
Toponym
Geographic Location Country And Or Sea: Finland
Environment
Isolation Source: lake water
Environment Biome: lentic water body
Environment Feature: lake
Other
Ph: 6
Temperature: 4.8
Geographic Location Depth: 5.1
Package
Ena Checklist: ERC000047
Additional Accessions
ERS4600323
All retrieved samples
Metadata retrieved 4 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license