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cognitis nomina
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Genomes
sc|0001471
JSON
Genome sc|0001471
Name
Mesorhizobium humile
Database
NCBI Assembly
Accession
GCA_033977215.1
Genomics
Accession
NCBI Assembly:
GCA_033977215.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
99.1%
Contamination:
0.9%
Quality:
94.6
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
230.8 ×
Source
BioSample: SAMN37150258
Other features
G+C Content:
63.56%
Coding Density:
86.53%
Codon Table:
11
N50:
234,275 bp
Contigs:
78
Largest Contig:
613,800 bp
Assembly Length:
6,750,448 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2013
Location
Lat Lon:
31.3831 S 19.0214 E
Toponym
Geo Loc Name:
South Africa: Van Rhyns Pass, Western Cape
Environment
Isolation Source:
root nodules
Env Broad Scale:
Soil
Env Local Scale:
Root nodule
Env Medium:
Root nodule
Other
Host:
Vachellia karroo
Package
Ncbi Submission Package:
MIGS.ba.plant-associated.6.0
Biosamplemodel:
MIGS/MIMS/MIMARKS.plant-associated
All retrieved samples
SAMN37150258
: MIGS Cultured Bacterial/Archaeal sample from Mesorhizobium sp. VK2B
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN37150258
×
Keywords: GSC:MIxS;MIGS:6.0
strain
VK2B
collection_date
2013
isol_growth_condt
https://doi.org/10.3389/fmicb.2019.01195
ref_biomaterial
Unpublished
INSDC secondary accession
SRS19046904
organism
Mesorhizobium sp. VK2B
env_broad_scale
Soil
env_local_scale
Root nodule
NCBI submission package
MIGS.ba.plant-associated.6.0
host
Vachellia karroo
num_replicons
1
geo_loc_name
South Africa: Van Rhyns Pass, Western Cape
env_medium
Root nodule
lat_lon
31.3831 S 19.0214 E
isolation_source
root nodules
BioSampleModel
MIGS/MIMS/MIMARKS.plant-associated
ENA-FIRST-PUBLIC
2023-11-20
ENA-LAST-UPDATE
2023-11-20
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