Genome sc|0001638

Genomics

Accession

NCBI Assembly:GCA_016710365.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.73%
• Contamination: 1.82%
• Quality: 88.63

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 17 amino acids

Sequencing depth

8.4 ×

Source

• BioSample: SAMN16426149
• BioSample: SAMN14825702

Other features

• G+C Content: 60.66%
• Coding Density: 86.41%
• Codon Table: 11
• N50: 172,279 bp
• Contigs: 68
• Largest Contig: 510,391 bp
• Assembly Length: 6,608,906 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2018-08-29

Location

Lat Lon: 57.421265 N 9.975411 E

Toponym

Geo Loc Name: Denmark: Hjorring

Environment

Sample Type: metagenomic assembly

Isolation Source: activated sludge from Hjor_18-Q3-R7-51 • activated sludge

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: Waste Water [ENVO:00002001]

Env Medium: Activated Sludge [ENVO:00002046]

Other

Depth: 1m

Package

Ncbi Submission Package: MIMAG.wastewater.5.0 • MIMS.me.wastewater.5.0

Biosamplemodel: MIMAG.wastewater • MIGS/MIMS/MIMARKS.wastewater

All retrieved samples

• SAMN16426149: MIMAG Metagenome-assembled Genome sample from Anaerolineales bacterium
• SAMN14825702: MIMS Environmental/Metagenome sample from activated sludge metagenome

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Metadata retrieved 5 months ago