Genome sc|0000261

Genomics

Accession

NCBI Assembly:GCA_947581785.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.41%
• Contamination: 3.3%
• Quality: 76.91

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Source

• SRA: SRR10996928

Other features

• G+C Content: 68.94%
• Coding Density: 93.52%
• Codon Table: 11
• N50: 85,903 bp
• Contigs: 52
• Largest Contig: 340,132 bp
• Assembly Length: 3,197,555 bp
• Ambiguous Assembly Fraction: 0.00069%

Submitter comments

Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA  

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2015-12-22

Location

Lat Lon: 18.832467 S 147.633250 E

Toponym

Geo Loc Name: Australia: Davies Reef

Environment

Isolation Source: marine sponge reef biome

Env Broad Scale: coral reef

Env Local Scale: marine sponge reef biome

Env Medium: Tissue

Other

Host: Ircinia ramosa

Package

Ncbi Submission Package: MIMS.me.host-associated.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SRS6086968: MIMS Environmental/Metagenome sample from sponge metagenome

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Metadata retrieved 10 months ago