JSON

Genome sc|0000262

Name

Palauibacter rhopaloidicola

Database

NCBI Assembly

Accession

GCA_947581625.1

Genomics

Accession
NCBI Assembly:GCA_947581625.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.51%
  • Contamination: 4.4%
  • Quality: 72.51
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 27.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 68.88%
  • Coding Density: 92.72%
  • Codon Table: 11
  • N50: 132,675 bp
  • Contigs: 58
  • Largest Contig: 287,516 bp
  • Assembly Length: 4,078,012 bp
  • Ambiguous Assembly Fraction: 0.013%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete
Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-10-25
Location
Lat Lon: 18.763498 S 146.519327 E
Toponym
Geo Loc Name: Australia: Davies Reef
Environment
Isolation Source: marine sponge reef biome
Env Broad Scale: coral reef
Env Local Scale: marine sponge reef biome
Env Medium: Tissue
Other
Host: Rhopaloeides odorabile
Package
Ncbi Submission Package: MIMS.me.host-associated.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated
All retrieved samples
Metadata retrieved about 1 month ago

Sequencing Experiments

SRR10996927


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