Genome sc|0000262

Genomics

Accession

NCBI Assembly:GCA_947581625.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.51%
• Contamination: 4.4%
• Quality: 72.51

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 27.0%)
• tRNAs for 20 amino acids

Source

• SRA: SRR10996927

Other features

• G+C Content: 68.88%
• Coding Density: 92.72%
• Codon Table: 11
• N50: 132,675 bp
• Contigs: 58
• Largest Contig: 287,516 bp
• Assembly Length: 4,078,012 bp
• Ambiguous Assembly Fraction: 0.013%

Submitter comments

 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SRS6086965

Date

Collection Date: 2018-10-25

Location

Lat Lon: 18.763498 S 146.519327 E

Toponym

Geo Loc Name: Australia: Davies Reef

Environment

Isolation Source: marine sponge reef biome

Env Broad Scale: coral reef

Env Local Scale: marine sponge reef biome

Env Medium: Tissue

Other

Host: Rhopaloeides odorabile

Package

Ncbi Submission Package: MIMS.me.host-associated.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SRS6086965: MIMS Environmental/Metagenome sample from sponge metagenome

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Metadata retrieved 2 months ago