JSON

Genome sc|0003561

Name

“Hahnella aquatica”

Database

NCBI Assembly

Accession

GCA_965194505.1

Genomics

Accession
NCBI Assembly:GCA_965194505.1
Cultures
Strain sc|0039723
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
985.8 ×
Source
Other features
  • G+C Content: 61.8%
  • Coding Density: 95.01%
  • Codon Table: 11
  • N50: 1,834,640 bp
  • Contigs: 1
  • Largest Contig: 1,834,640 bp
  • Assembly Length: 1,834,640 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome of a culture that was harvested by filtration on 0.22 µm filters; DNA was extracted with the Quiagen MagAttract HMW DNA kit. Sequencing was done with Illuminia Novaseq 6000, trimming of reads with BBMap v36.x, assembly with SPAdes v3.12.0. The genome was manually curated to a circular chromosome in Geneious 10 by repeated rounds of read mapping. Completeness and contamination were assessed with CheckM.
Automated checks
Complete
Last modified 18 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-07-23
Location
Geographic Location Latitude: 50° 39′ 13″ N
Geographic Location Longitude: 13° 56′ 40″ E
View map of sampling locations
Toponym
Geographic Location Country And Or Sea: Czechia
Environment
Broad Scale Environmental Context: aquatic
Local Environmental Context: Lake Milada - �st� nad Labem - Czech Republic
Environmental Medium: water
Other
Depth: 5
Package
Ena Checklist: ERC000024
All retrieved samples
Metadata retrieved 2 months ago

Sequencing Experiments

Illumina NovaSeq 6000 paired end sequencing


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