Pelagilacustribacter hypolimneticus assembled from Lake Traunsee, Austria

BioSample Accession(s)

SAMEA117871817, ERS23861770

ENA-CHECKLIST

ERC000047

assembly software

MEGAHIT

binning software

MetaBAT, MetaBAT2, MaxBin

organism

Candidatus Pelagibacterales bacterium

broad-scale environmental context

freshwater biome

assembly quality

Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

collection date

2019-10-25

sample derived from

ERS6344559

geographic location (longitude)

13.8

taxonomic identity marker

multi-marker approach

binning parameters

coverage and kmer

completeness score

93.98

contamination score

4.82

environmental medium

natural lake

geographic location (latitude)

47.86667

scientific_name

Candidatus Pelagibacterales bacterium

local environmental context

freshwater lake

metagenomic source

lake water metagenome

project name

PRJEB35770

completeness software

CheckM

geographic location (country and/or sea)

Austria

isolation_source

Lake Traunsee

Freshwater metagenome from Traunsee Lake, Austria; 150m depth, 25oct2019, filtersize 0.22 um

BioSample Accession(s)

SAMEA8660015, ERS6344559

ENA-CHECKLIST

ERC000011

collection_date

2019-10-25

organism

lake water metagenome

geographic location (longitude)

13.8

geographic location (latitude)

47.866667

scientific_name

lake water metagenome

common name

lake water metagenome

investigation type

metagenome

ENA-FIRST-PUBLIC

2022-06-30

project name

ena-STUDY-BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO-11-12-2019-16:15:02:404-1223

sequencing method

Illumina Novaseq

ENA-LAST-UPDATE

2022-06-30

environment (biome)

freshwater lake

environment (feature)

fresh water

geographic location (country and/or sea)

Austria

Metadata as EBI XML

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