JSON

Genome sc|0003606

Name

“Allorhodoferax lacus”

Database

NCBI Assembly

Accession

GCA_965194635.1

Genomics

Accession
NCBI Assembly:GCA_965194635.1
Cultures
Strain sc|0038966
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
509.0 ×
Source
Other features
  • G+C Content: 60.1%
  • Coding Density: 92.95%
  • Codon Table: 11
  • N50: 2,886,491 bp
  • Contigs: 2
  • Largest Contig: 2,886,491 bp
  • Assembly Length: 3,677,519 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome of a culture that was harvested by filtration on 0.22 µm filters; DNA was extracted with the Quiagen MagAttract HMW DNA kit. Sequencing was done with Illuminia Novaseq 6000, trimming of reads with BBMap v36.x, assembly with SPAdes v3.12.0. The genome was manually polished in Geneious 10 by repeated rounds of read mapping. Completeness and contamination were assessed with CheckM.
Automated checks
Complete
Last modified about 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-04-03
Location
Geographic Location Latitude: 47° 20′ 60″ N
Geographic Location Longitude: 8° 40′ 46″ E
View map of sampling locations
Toponym
Geographic Location Country And Or Sea: Switzerland
Environment
Broad Scale Environmental Context: aquatic
Local Environmental Context: Lake Zurich - Canton of Z�rich - Switzerland
Environmental Medium: water
Other
Depth: 5
Package
Ena Checklist: ERC000024
All retrieved samples
Metadata retrieved about 2 months ago

Sequencing Experiments

Illumina NovaSeq 6000 paired end sequencing


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