JSON

Genome sc|0000399

Name

Pantoea rara

Database

NCBI Assembly

Accession

GCA_002419935.1

Genomics

Accession
NCBI Assembly:GCA_002419935.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.87%
  • Contamination: 0.36%
  • Quality: 96.07
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Sequencing depth
40.92 ×
Source
Other features
  • G+C Content: 54.96%
  • Coding Density: 87.81%
  • Codon Table: 11
  • N50: 464,666 bp
  • Contigs: 14
  • Largest Contig: 1,392,764 bp
  • Assembly Length: 4,248,722 bp
  • Ambiguous Assembly Fraction: 0.009%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2013-08-07
Location
Lat Lon: 40.67 N 73.98 W
Toponym
Geo Loc Name: USA:New York City
Environment
Env Material: metal
Sample Type: metagenomic assembly
Env Biome: city
Isolation Source: metal
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
Metadata retrieved 10 months ago


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